Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/1a61cb0673d6aed875d3e8d56c4566/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/3aea82f6e070c24e4617bec33063c5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/1a61cb0673d6aed875d3e8d56c4566/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/3aea82f6e070c24e4617bec33063c5/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXnMglgy/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXnMglgy/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXnMglgy/chr4_22420786-22421189.bed.gz.tbi
[2026-06-03T20:58:21.786478Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:21.787244Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:21.787261Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:21.787266Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:21.787270Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXnMglgy'
[2026-06-03T20:58:21.787274Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:21.787280Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:21.787284Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:21.787288Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-03T20:58:21.787291Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:21.787294Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:21.787298Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:21.787301Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:21.787305Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:21.788061Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:21.788122Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:21.793673Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:21.794421Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:21.794596Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:21.794884Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:21.795165Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.795628Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.795749Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.795828Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.795952Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796016Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796133Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796194Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796322Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796418Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796525Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796585Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.796888Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.797189Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.797317Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.797538Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.797882Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.799619Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.799917Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.800421Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:21.800699Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.800948Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801068Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801133Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801241Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801301Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801416Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801479Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801589Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801654Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801761Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801827Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.801953Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.802036Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.802297Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.802620Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.802733Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.802797Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.802905Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.802964Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803074Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803135Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803245Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803314Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803421Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803484Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803595Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803658Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804134Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804442Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804551Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804616Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804725Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804789Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804900Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804960Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.805069Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.805134Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.805238Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.805300Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.805415Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.805642Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806092Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806157Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806261Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806337Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806447Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806507Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806615Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806678Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806787Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806849Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.806953Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.807015Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.808146Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.808372Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809179Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809681Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809800Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809865Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809974Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810035Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810147Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810208Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810316Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810381Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810488Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810560Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810684Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.810791Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.811502Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.811565Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.811672Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.811736Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.811847Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.811908Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.827011Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.827630Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.827701Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.827887Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.827955Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.828109Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.828174Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.828299Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.828364Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.828410Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:21.831663Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.832406Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.832710Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.833427Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.833656Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.834257Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.834868Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.836846Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.837721Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.838253Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:21.845035Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T20:58:21.847065Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T20:58:21.848332Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:21.849284Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T20:58:21.851934Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T20:58:21.853367Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:21.854510Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T20:58:21.953249Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.954213Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.957211Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T20:58:22.419412Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.420468Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.423208Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:22.436498Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.437443Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.440287Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:22.651976Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.653048Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.656277Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:22.867775Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.868781Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.871814Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:22.901149Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.902174Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.904888Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T20:58:23.016710Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.017724Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.020336Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T20:58:23.051033Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.052041Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.054818Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T20:58:23.116472Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.117480Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.120133Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T20:58:23.281955Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.282979Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.285740Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:23.447587Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.448593Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.451481Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T20:58:23.481958Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.482922Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.484116Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.486096Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.486494Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T20:58:23.488700Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:23.518109Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.518190Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.519038Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.519543Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.522474Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:23.523651Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:23.684505Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.685481Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.688452Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:24.000725Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.001678Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.004602Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T20:58:24.216473Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.217435Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.220116Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:24.249754Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.250709Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.253492Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:24.415445Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.416459Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.419744Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:24.531258Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.532210Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.535086Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T20:58:24.540033Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.540787Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.543268Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:24.556577Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.557349Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.560130Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:24.565355Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.566170Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.568488Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:24.598316Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.598401Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.598427Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.599198Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.599678Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.601629Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.602085Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T20:58:24.604645Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:24.605548Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:24.634243Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.634330Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.634363Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.635127Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.635424Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.635838Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.638347Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:24.640488Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:24.641517Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:24.701316Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.702210Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.705225Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T20:58:24.710350Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.711122Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.713602Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:24.825660Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.826557Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.829339Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:24.858489Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.858584Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.859390Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.860085Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.862895Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:24.863883Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:24.924641Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.924744Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.925531Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.926124Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.929765Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T20:58:24.930792Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T20:58:24.992095Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.992970Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.996167Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T20:58:25.025158Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.026040Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.028609Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:25.059383Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.060206Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.063065Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:25.325180Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.326068Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.328728Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:25.540942Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.541035Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.541799Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.542687Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.545477Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:25.546482Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:25.657188Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.657998Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.661078Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:25.665923Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.666623Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.669657Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:25.698780Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.698860Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.699542Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.701349Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.702151Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T20:58:25.704307Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:25.733580Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.733660Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.734322Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.734909Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.737607Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T20:58:25.738677Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:25.767344Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.768014Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.770648Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:25.882370Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.883123Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.885747Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:25.947518Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.948243Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.951079Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T20:58:25.980398Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.981063Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.983679Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:26.013188Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.013831Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.016345Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T20:58:26.046002Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.046672Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.049207Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:26.461866Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.462619Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.465406Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T20:58:26.577198Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.577923Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.580715Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:26.642412Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.643146Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.645507Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T20:58:26.676285Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.676932Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.679756Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:26.709213Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.709919Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.712589Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:26.774330Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.775054Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.777707Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:26.839034Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.839666Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.842361Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:26.904038Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.904761Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.907312Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:26.936883Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.937541Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.940360Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:26.969892Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.970551Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.972724Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T20:58:27.003568Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.004230Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.006891Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T20:58:27.218876Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.219567Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.222343Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T20:58:27.227551Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.228107Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.230704Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:27.260339Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.260414Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.260960Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.261575Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.264254Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T20:58:27.264745Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:27.265798Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.266324Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.268948Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:27.298493Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.298579Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.299086Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.299708Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.302337Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:27.302997Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:27.332685Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.333246Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.335619Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T20:58:27.365273Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.365865Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.368400Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:27.397982Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.398550Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.400955Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:27.406252Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.406752Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.409267Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:27.438912Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.439399Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.441917Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:27.455689Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.456195Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.458524Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:27.472095Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.472588Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.474798Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:27.489320Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.489819Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.492457Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T20:58:27.521930Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.522005Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.522032Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.522485Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.524939Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:27.554552Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.618632Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.619116Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.621546Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:27.651222Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.765366Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.765868Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.768553Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:27.829931Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.830015Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.830446Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.832607Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T20:58:27.862425Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.878208Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.878618Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.881012Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:27.910656Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.826274Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.826797Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.829540Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:28.858878Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.859143Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.859262Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.859869Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.860397Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.863791Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:28.865277Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.866241Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.892767Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.892836Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.892858Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.893051Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.894282Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.895729Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.896678Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.926402Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.926474Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.926642Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.928928Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:28.958630Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.378882Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:40.676033Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:40.676033Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] 
[2026-06-03T20:58:40.676033Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:40.676092Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] 
[2026-06-03T20:58:40.676099Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:40.676106Z] [nf-043aea82f6e070c24e4617bec33063c5-2d3a8-z6dbp] [599_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec