Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4054179d8c2faede8275f03a3b1080/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/d8c037b0000076abba006e30145e38/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/d8c037b0000076abba006e30145e38/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rnswevmc because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:49:45,852 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:49:46,646 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:49:46,817 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:49:47,730 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:49:47,905 - cnv_pipe.batch.run_model - INFO - Processing cluster 994 with 131 probes
2026-06-03 21:49:48,279 - cnv_pipe.batch.run_model.cluster994 - INFO - Child process started for cluster 994 with 131 probes
2026-06-03 21:50:29,485 - cnv_pipe.batch.run_model.cluster994 - INFO - Child process finished cluster 994. Wrote cluster_994_samples.csv and cluster_994_params.csv
2026-06-03 21:50:29,486 - cnv_pipe.batch.run_model - INFO - Cluster 994 finished in 41.58 seconds. Status: SUCCESS