cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:161000001, elapsed 0.3s, est remaining 6.0s, peak mem 427MB, user 0.6s, sys 8.2s, output queue size 6
progress 10% @chr2:66000001, elapsed 0.6s, est remaining 5.2s, peak mem 818MB, user 1.2s, sys 15.9s, output queue size 7
progress 15% @chr2:235000001, elapsed 0.8s, est remaining 4.7s, peak mem 1013MB, user 1.7s, sys 23.3s, output queue size 2
progress 20% @chr3:137000001, elapsed 1.1s, est remaining 4.4s, peak mem 1213MB, user 2.3s, sys 30.6s, output queue size 16
progress 25% @chr4:115000001, elapsed 1.3s, est remaining 4.0s, peak mem 1358MB, user 2.7s, sys 38.0s, output queue size 2
progress 30% @chr5:89000001, elapsed 1.6s, est remaining 3.7s, peak mem 1544MB, user 3.2s, sys 45.1s, output queue size 7
progress 35% @chr6:69000001, elapsed 1.8s, est remaining 3.4s, peak mem 1646MB, user 3.7s, sys 52.2s, output queue size 5
progress 40% @chr7:58000001, elapsed 2.1s, est remaining 3.1s, peak mem 1721MB, user 4.2s, sys 59.5s, output queue size 4
progress 45% @chr8:59000001, elapsed 2.3s, est remaining 2.9s, peak mem 1865MB, user 4.6s, sys 67.0s, output queue size 1
progress 50% @chr9:74000001, elapsed 2.6s, est remaining 2.6s, peak mem 1970MB, user 5.0s, sys 74.3s, output queue size 11
progress 55% @chr10:95000001, elapsed 2.8s, est remaining 2.3s, peak mem 2047MB, user 5.4s, sys 81.8s, output queue size 1
progress 60% @chr11:123000001, elapsed 3.1s, est remaining 2.1s, peak mem 2129MB, user 5.8s, sys 89.3s, output queue size 5
progress 65% @chr13:14000001, elapsed 3.4s, est remaining 1.8s, peak mem 2194MB, user 6.2s, sys 96.6s, output queue size 1
progress 70% @chr14:60000001, elapsed 3.6s, est remaining 1.5s, peak mem 2240MB, user 6.7s, sys 103.8s, output queue size 1
progress 75% @chr16:14000001, elapsed 3.8s, est remaining 1.3s, peak mem 2279MB, user 7.0s, sys 111.2s, output queue size 10
progress 80% @chr17:81000001, elapsed 4.1s, est remaining 1.0s, peak mem 2324MB, user 7.4s, sys 118.6s, output queue size 3
progress 85% @chr20:22000001, elapsed 4.4s, est remaining 0.8s, peak mem 2383MB, user 7.8s, sys 126.0s, output queue size 9
progress 90% @chrX:47000001, elapsed 4.9s, est remaining 0.5s, peak mem 2788MB, user 12.0s, sys 128.7s, output queue size 114
progress 95% @chrY:43000001, elapsed 5.0s, est remaining 0.3s, peak mem 2809MB, user 14.6s, sys 129.6s, output queue size 276
progress 100% @chr21:41000001, elapsed 7.3s, est remaining 0.0s, peak mem 2822MB, user 34.7s, sys 131.8s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047064
output file size: 93248824
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.010 user 0.003 sys 0.022 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.021 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.008 real
advance: 3219322 calls 2.106 user 16.084 sys 18.846 real
done: 1 calls 0.378 user 0.483 sys 0.864 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.001 sys 7.330 real
fetch: 3219323 calls 0.381 user 15.925 sys 16.853 real
fetch_reads: 3219322 calls 0.635 user 15.544 sys 17.033 real
fetch_ref: 13004 calls 0.041 user 0.022 sys 0.066 real
fetch_vcf: 13004 calls 1.957 user 0.115 sys 2.080 real
idle: 2070 calls 4.521 user 0.555 sys 106.274 real
init: 1 calls 0.001 user 0.000 sys 0.027 real
update: 13229 calls 12.086 user 1.223 sys 14.180 real
write: 3219323 calls 11.651 user 16.301 sys 27.890 real
overall: 2959691776 mem 46.447 user 133.358 sys 9.682 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.018 user 0.002 sys 0.027 real
done: 1 calls 0.047 user 0.013 sys 0.059 real
idle: 61 calls 0.002 user 0.000 sys 31.244 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83664896 mem 0.071 user 0.046 sys 1.057 real