Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4054179d8c2faede8275f03a3b1080/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/ff52ecd499be97f695d92b4b05d653/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/ff52ecd499be97f695d92b4b05d653/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ih63q9jd because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:49:47,882 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:49:48,672 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:49:48,842 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:49:49,765 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:49:49,920 - cnv_pipe.batch.run_model - INFO - Processing cluster 1005 with 197 probes
2026-06-03 21:49:50,296 - cnv_pipe.batch.run_model.cluster1005 - INFO - Child process started for cluster 1005 with 197 probes
2026-06-03 21:50:47,364 - cnv_pipe.batch.run_model.cluster1005 - INFO - Child process finished cluster 1005. Wrote cluster_1005_samples.csv and cluster_1005_params.csv
2026-06-03 21:50:47,366 - cnv_pipe.batch.run_model - INFO - Cluster 1005 finished in 57.45 seconds. Status: SUCCESS