File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/84e5d616d57224777a3e54c492fe77/.command.log
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/84e5d616d57224777a3e54c492fe77/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/84e5d616d57224777a3e54c492fe77/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/55e68b26048fb02e6d377a2b8f5bd1/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/55e68b26048fb02e6d377a2b8f5bd1/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T21:45:05.729323Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:05.736858Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:05.736893Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:05.736904Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:05.736915Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXeVdtdK'
[2026-06-03T21:45:05.736925Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:05.736938Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:05.736948Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:05.736958Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] memMb: 773643
[2026-06-03T21:45:05.736969Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:05.736979Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:05.736989Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:05.736999Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:05.737010Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:05.737599Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:05.737800Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:05.748783Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:05.749637Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:05.749919Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:05.750255Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:05.750562Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.751212Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.751629Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.752104Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.752273Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.753133Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.753701Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.755212Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.756764Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.757157Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:05.757859Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.758349Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.758623Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.758770Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.759008Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.759153Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.759615Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.760048Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.760303Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.760444Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.760814Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.760969Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.761580Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762069Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762322Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762463Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762707Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762851Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.763186Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.763828Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.764085Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.764287Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.764548Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.764701Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.765277Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.765902Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.766161Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.766320Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.766834Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.767261Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.768349Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.768523Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.768770Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.769042Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.771016Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.771752Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.772008Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.772276Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.772554Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.772827Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.773771Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.773925Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.774170Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.774318Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.774564Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.774843Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.775857Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.776015Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.776251Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.776407Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.776649Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.777020Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.778087Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.778336Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.778598Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.778761Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.805491Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.806838Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.807006Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.807445Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.808942Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.809203Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.809853Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.810086Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.810777Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.813374Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.813920Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.815021Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.815212Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.816336Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.817161Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.818505Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.818858Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.819563Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:05.820997Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:05.828932Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:45:05.833222Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:05.843268Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:05.848598Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:05.849124Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:45:05.853997Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:05.855304Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:07.269208Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.271168Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.275239Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:08.238139Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.240200Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.244530Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:08.355506Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.355675Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.357593Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.358170Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.362864Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:08.364595Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:08.473239Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.475289Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.479239Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:08.890781Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.890906Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.892938Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.893538Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.898814Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:08.900361Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:09.209305Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.211374Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.215889Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:09.276778Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.278854Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.282716Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:09.393726Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.395848Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.400262Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:45:09.460289Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.462082Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.467971Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:10.079282Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.081344Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.084937Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:10.145755Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.146977Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.150846Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:10.261904Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.263160Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.267047Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:10.327743Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.329095Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.332529Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:10.393231Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.394376Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.398118Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:10.809673Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.811297Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.815580Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:10.926197Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.928630Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.932821Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:11.093928Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.095158Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.099638Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:11.160183Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.161951Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.165984Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:11.677593Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.679313Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.683460Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:11.743998Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.745778Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.750232Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:12.015293Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:45:12.061279Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.061416Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.063005Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.063548Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.067658Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:45:12.069240Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:12.128561Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.130252Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.134062Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:12.162724Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.164536Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.168339Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:12.197122Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.198713Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.202900Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:12.215020Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.216582Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.220758Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:12.249531Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.251174Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.255606Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:12.566526Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.568081Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.572602Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:12.783332Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.784381Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.788642Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:12.849267Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.850311Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.854640Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:13.516929Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.517948Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.521718Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:13.582713Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.583716Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.587202Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:13.648193Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.649246Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.653212Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:13.764298Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.765296Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.769683Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:13.830587Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.831576Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.835643Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:14.448281Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.449377Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.453234Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:14.514232Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.515204Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.519178Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:45:14.580119Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.581056Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.584896Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:14.645934Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.646862Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.650644Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:14.711606Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.712538Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.716627Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:45:14.827619Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.828911Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.832856Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:14.893807Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.893937Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.894802Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.895154Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.899485Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:14.901031Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:14.960433Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.961370Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.965494Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:14.994250Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.995213Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.999116Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:15.060075Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.061083Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.065101Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:15.176157Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.177118Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.180820Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:15.241864Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.243654Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.247448Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:15.308268Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.308487Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.310224Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.313789Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:15.374697Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.407161Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.408651Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.412207Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:15.473018Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.138910Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.139719Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.143466Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:16.156101Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.157604Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.161154Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:16.190127Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.206376Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.671942Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.672953Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.676631Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:16.737705Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.654191Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.655273Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.658837Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:45:17.719870Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.337739Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.338845Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.342412Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:19.403236Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.403934Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.404242Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.404765Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.405447Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.410935Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:19.413067Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:19.414308Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:19.470076Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.470214Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.470272Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.470794Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.471304Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.474871Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:19.475413Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:19.536747Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.536911Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.537360Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.540815Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:19.601982Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:24.768378Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:38.856524Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:38.856524Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] 
[2026-06-03T21:45:38.856524Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:38.856638Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] 
[2026-06-03T21:45:38.856657Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:38.856679Z] [nf-f684e5d616d57224777a3e54c492fe77-5728f-ffmmr] [784_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec