.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (positive_somatic_control_2)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/4852bd13b2d3612e1951f03cc387fb/.command.err
Size: 368 bytes
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (positive_somatic_control_2)
Attempt

Content

Loading PON positions from pon_tnseq_42_curated_v4.vcf.gz
  Loaded 550,680 PON positions
Loading POT positions from aih_tumor_1577_pot_1pct_artifacts_only.vcf.gz
  Loaded 545 POT positions
Hard filter summary: 184 variants processed, 0 PASS
  low_tumor_dp: 38
  low_normal_dp: 184
  low_tumor_alt: 37
  high_normal_vaf: 104
  panel_of_normals: 77
  panel_of_tumors: 0