File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/b708e8bb69408f4b9438f9afb767e2/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7vtouemt because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:51:16,336 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:51:17,694 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:51:17,990 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:51:19,875 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:51:20,177 - cnv_pipe.batch.run_model - INFO - Processing cluster 1438 with 195 probes
2026-06-03 21:51:20,814 - cnv_pipe.batch.run_model.cluster1438 - INFO - Child process started for cluster 1438 with 195 probes
2026-06-03 21:52:59,569 - cnv_pipe.batch.run_model.cluster1438 - INFO - Child process finished cluster 1438. Wrote cluster_1438_samples.csv and cluster_1438_params.csv
2026-06-03 21:52:59,571 - cnv_pipe.batch.run_model - INFO - Cluster 1438 finished in 99.39 seconds. Status: SUCCESS