Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4054179d8c2faede8275f03a3b1080/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/02f9fb55dffa8e583ae6025a567590/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/02f9fb55dffa8e583ae6025a567590/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-b15p_sk3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:47:03,972 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:47:04,813 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:47:04,990 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:47:05,906 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:47:06,069 - cnv_pipe.batch.run_model - INFO - Processing cluster 108 with 192 probes
2026-06-03 21:47:06,446 - cnv_pipe.batch.run_model.cluster108 - INFO - Child process started for cluster 108 with 192 probes
2026-06-03 21:48:04,815 - cnv_pipe.batch.run_model.cluster108 - INFO - Child process finished cluster 108. Wrote cluster_108_samples.csv and cluster_108_params.csv
2026-06-03 21:48:04,816 - cnv_pipe.batch.run_model - INFO - Cluster 108 finished in 58.75 seconds. Status: SUCCESS