File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2ba1485096fc6fff23b9ae4c74bb3e/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-256c8o7o because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:48:24,756 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:48:25,585 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:48:25,756 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:48:26,685 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:48:26,848 - cnv_pipe.batch.run_model - INFO - Processing cluster 564 with 167 probes
2026-06-03 21:48:27,223 - cnv_pipe.batch.run_model.cluster564 - INFO - Child process started for cluster 564 with 167 probes
2026-06-03 21:49:19,066 - cnv_pipe.batch.run_model.cluster564 - INFO - Child process finished cluster 564. Wrote cluster_564_samples.csv and cluster_564_params.csv
2026-06-03 21:49:19,067 - cnv_pipe.batch.run_model - INFO - Cluster 564 finished in 52.22 seconds. Status: SUCCESS