Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4054179d8c2faede8275f03a3b1080/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/045934b18aca91dd7bdd8939e8f550/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/045934b18aca91dd7bdd8939e8f550/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-2nk3ncl1 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:50:39,029 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:50:39,845 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:50:40,016 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:50:40,943 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:50:41,020 - cnv_pipe.batch.run_model - INFO - Processing cluster 1279 with 176 probes
2026-06-03 21:50:41,485 - cnv_pipe.batch.run_model.cluster1279 - INFO - Child process started for cluster 1279 with 176 probes
2026-06-03 21:51:30,974 - cnv_pipe.batch.run_model.cluster1279 - INFO - Child process finished cluster 1279. Wrote cluster_1279_samples.csv and cluster_1279_params.csv
2026-06-03 21:51:30,975 - cnv_pipe.batch.run_model - INFO - Cluster 1279 finished in 49.96 seconds. Status: SUCCESS