File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/c39ae993252cde29a7127adb3828e0/.command.err
Size
4.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
No more license available for sentieon:Metrics
Received only 14 licenses out of 31 requested for sentieon:Metrics
progress 5% @chr1:161000001, elapsed 900.2s, est remaining 17103.2s, peak mem 101MB, user 0.0s, sys 0.3s, output queue size 1
progress 10% @chr2:75000001, elapsed 900.2s, est remaining 8101.8s, peak mem 101MB, user 0.1s, sys 0.6s, output queue size 5
progress 15% @chr2:234000001, elapsed 900.2s, est remaining 5101.3s, peak mem 101MB, user 0.2s, sys 0.9s, output queue size 2
progress 20% @chr3:152000001, elapsed 900.3s, est remaining 3601.0s, peak mem 101MB, user 0.3s, sys 1.3s, output queue size 7
progress 25% @chr4:116000001, elapsed 900.3s, est remaining 2700.9s, peak mem 101MB, user 0.4s, sys 1.6s, output queue size 2
progress 30% @chr5:86000001, elapsed 900.3s, est remaining 2100.7s, peak mem 101MB, user 0.5s, sys 1.9s, output queue size 1
progress 35% @chr6:62000001, elapsed 900.4s, est remaining 1672.1s, peak mem 101MB, user 0.5s, sys 2.3s, output queue size 3
progress 40% @chr7:52000001, elapsed 900.4s, est remaining 1350.6s, peak mem 101MB, user 0.7s, sys 2.6s, output queue size 3
progress 45% @chr8:59000001, elapsed 900.4s, est remaining 1100.5s, peak mem 101MB, user 0.8s, sys 2.9s, output queue size 1
progress 50% @chr9:72000001, elapsed 900.4s, est remaining 900.4s, peak mem 101MB, user 0.9s, sys 3.2s, output queue size 1
progress 55% @chr10:96000001, elapsed 900.5s, est remaining 736.7s, peak mem 101MB, user 1.0s, sys 3.4s, output queue size 2
progress 60% @chr11:121000001, elapsed 900.5s, est remaining 600.3s, peak mem 101MB, user 1.0s, sys 3.7s, output queue size 1
progress 65% @chr13:14000001, elapsed 900.5s, est remaining 484.9s, peak mem 101MB, user 1.1s, sys 4.0s, output queue size 1
progress 70% @chr14:62000001, elapsed 900.6s, est remaining 386.0s, peak mem 101MB, user 1.1s, sys 4.4s, output queue size 7
progress 75% @chr16:12000001, elapsed 900.6s, est remaining 300.2s, peak mem 101MB, user 1.2s, sys 4.7s, output queue size 1
progress 80% @chr17:80000001, elapsed 900.6s, est remaining 225.2s, peak mem 101MB, user 1.2s, sys 5.0s, output queue size 4
progress 85% @chr20:22000001, elapsed 900.6s, est remaining 158.9s, peak mem 101MB, user 1.3s, sys 5.3s, output queue size 4
progress 90% @chrX:30000001, elapsed 900.7s, est remaining 100.1s, peak mem 154MB, user 2.0s, sys 5.5s, output queue size 109
progress 95% @chrY:24000001, elapsed 900.8s, est remaining 47.4s, peak mem 155MB, user 2.5s, sys 5.6s, output queue size 240
progress 100% @chr21:41000001, elapsed 901.0s, est remaining 0.0s, peak mem 163MB, user 3.2s, sys 5.7s, output queue size 3664
Received only 14 licenses out of 17 requested for sentieon:Metrics
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=14
input file size: 52290604
reads: 1001133
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.291 user 2.885 sys 4.409 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.001 sys 900.992 real
idle: 44 calls 0.009 user 0.002 sys 830.578 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 171237376 mem 3.558 user 6.088 sys 960.290 real