File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/4dd78cb860078d5b3b67e68ca23f89/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qi8673af because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:49:54,077 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:49:54,891 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:49:55,068 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:49:56,028 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:49:56,200 - cnv_pipe.batch.run_model - INFO - Processing cluster 1042 with 186 probes
2026-06-03 21:49:56,603 - cnv_pipe.batch.run_model.cluster1042 - INFO - Child process started for cluster 1042 with 186 probes
2026-06-03 21:50:51,667 - cnv_pipe.batch.run_model.cluster1042 - INFO - Child process finished cluster 1042. Wrote cluster_1042_samples.csv and cluster_1042_params.csv
2026-06-03 21:50:51,668 - cnv_pipe.batch.run_model - INFO - Cluster 1042 finished in 55.47 seconds. Status: SUCCESS