cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18376800, elapsed 0.1s, est remaining 1.4s, peak mem 90MB, user 0.0s, sys 0.4s, output queue size 2143
progress 10% @chr1:37761367, elapsed 0.2s, est remaining 1.4s, peak mem 101MB, user 0.1s, sys 0.9s, output queue size 4794
progress 15% @chr1:65392431, elapsed 0.2s, est remaining 1.4s, peak mem 112MB, user 0.2s, sys 1.3s, output queue size 965
progress 20% @chr1:113837590, elapsed 0.3s, est remaining 1.3s, peak mem 122MB, user 0.3s, sys 1.8s, output queue size 3725
progress 25% @chr1:155238517, elapsed 0.4s, est remaining 1.2s, peak mem 132MB, user 0.4s, sys 2.1s, output queue size 6068
progress 30% @chr1:179102287, elapsed 0.5s, est remaining 1.1s, peak mem 143MB, user 0.5s, sys 2.6s, output queue size 8544
progress 35% @chr1:209795290, elapsed 0.7s, est remaining 1.3s, peak mem 153MB, user 0.5s, sys 3.1s, output queue size 10970
progress 40% @chr1:246986967, elapsed 0.8s, est remaining 1.2s, peak mem 160MB, user 0.6s, sys 3.3s, output queue size 13377
progress 45% @chr2:32597751, elapsed 0.9s, est remaining 1.1s, peak mem 169MB, user 0.6s, sys 3.6s, output queue size 15667
progress 50% @chr2:74474546, elapsed 1.0s, est remaining 1.0s, peak mem 179MB, user 0.7s, sys 3.8s, output queue size 18160
progress 55% @chr2:113499257, elapsed 1.0s, est remaining 0.9s, peak mem 187MB, user 0.7s, sys 4.2s, output queue size 20686
progress 60% @chr2:170954650, elapsed 1.1s, est remaining 0.7s, peak mem 202MB, user 0.8s, sys 4.5s, output queue size 23382
progress 65% @chr2:202765446, elapsed 1.2s, est remaining 0.6s, peak mem 210MB, user 0.8s, sys 4.8s, output queue size 25652
progress 70% @chr2:233770694, elapsed 1.2s, est remaining 0.5s, peak mem 219MB, user 0.9s, sys 5.2s, output queue size 28136
progress 75% @chr3:25619862, elapsed 1.3s, est remaining 0.4s, peak mem 231MB, user 1.0s, sys 5.6s, output queue size 30352
progress 80% @chr3:49807736, elapsed 1.4s, est remaining 0.3s, peak mem 239MB, user 1.0s, sys 5.9s, output queue size 32830
progress 85% @chr3:101857073, elapsed 1.4s, est remaining 0.3s, peak mem 251MB, user 1.1s, sys 6.2s, output queue size 35469
progress 90% @chr3:139538781, elapsed 1.5s, est remaining 0.2s, peak mem 262MB, user 1.1s, sys 6.7s, output queue size 38064
progress 95% @chr3:187741772, elapsed 1.6s, est remaining 0.1s, peak mem 273MB, user 1.1s, sys 7.2s, output queue size 40470
progress 100% @chr4:20618768, elapsed 1.6s, est remaining 0.0s, peak mem 281MB, user 1.3s, sys 7.5s, output queue size 42705
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 00050657
  features: bfebfbff 7ffefbff
  extended: d39ff7eb 00000818
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 12 max 96
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692767
output file size: 22305
reads: 1001089
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.018 user 0.018 sys 0.025 real
advance: 51084 calls 0.009 user 0.045 sys 0.037 real
calc: 100735 calls 0.008 user 0.002 sys 0.024 real
done: 1 calls 0.001 user 0.000 sys 0.003 real
execute: 1 calls 0.004 user 0.001 sys 4.006 real
fetch: 100735 calls 0.000 user 0.003 sys 0.027 real
fetch_ref: 100735 calls 0.222 user 0.152 sys 0.651 real
idle: 63 calls 0.003 user 0.003 sys 41.564 real
init: 1 calls 0.050 user 0.010 sys 0.065 real
region: 100735 calls 0.013 user 0.001 sys 0.029 real
tracker: 100735 calls 0.130 user 0.004 sys 0.173 real
overall: 297680896 mem 1.892 user 9.831 sys 5.197 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory