File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/468ac99789087ea0eb1f4f278b2768/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-03T21:45:00.078801Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:00.081723Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:00.081756Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:00.081762Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:00.081766Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9PXfeI'
[2026-06-03T21:45:00.081771Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:00.081776Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:00.081780Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:00.081783Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:00.081787Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:00.081791Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:00.081794Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:00.081798Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:00.081801Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:00.082598Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:00.082705Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:00.088358Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:00.089079Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:00.089276Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:00.089531Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:00.089764Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.090523Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.090654Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.090742Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.090877Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.091117Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.091416Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.091524Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.091603Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.091884Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.092341Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.093657Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.094136Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.094541Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:00.094798Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.094957Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095245Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095309Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095418Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095481Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095668Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095737Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095849Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.095915Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096025Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096087Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096210Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096364Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096689Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096756Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096864Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.096939Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097051Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097113Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097220Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097283Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097391Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097454Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097562Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097628Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.097827Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098168Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098320Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098408Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098515Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098579Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098691Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098799Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098914Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.098995Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.099105Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.099176Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.099394Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.099809Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.099920Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.099985Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100097Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100161Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100267Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100329Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100438Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100499Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100637Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100711Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100845Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.100958Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.101496Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.101558Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.101665Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.101731Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.101838Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.101899Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.102021Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.102088Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.118606Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.119006Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.119127Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.119298Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.120036Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.120109Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.120275Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.120381Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.120473Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.120831Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.121362Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.121672Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.122431Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.122560Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.123015Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:00.123379Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.124174Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.125487Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.127287Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.128058Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T21:45:00.132594Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T21:45:00.135397Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T21:45:00.138728Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:00.141153Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:00.144222Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:00.145681Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T21:45:00.207145Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.207954Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.211564Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:00.212359Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.213043Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.216088Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:00.568983Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T21:45:00.578096Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.578973Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.582195Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T21:45:01.294936Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.295015Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.295869Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.296230Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.299364Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T21:45:01.300702Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T21:45:01.328412Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.329502Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.333000Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T21:45:01.444010Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.444854Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.448052Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:01.477305Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.478125Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.480709Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T21:45:01.592490Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.593359Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.596029Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:01.757653Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.758501Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.761516Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:01.790596Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.791404Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.794260Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T21:45:02.106295Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.107099Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.109888Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T21:45:02.139167Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.139993Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.142767Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T21:45:02.254312Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.255106Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.258065Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T21:45:02.287068Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.288081Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.288445Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.290892Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.291639Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T21:45:02.293690Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:02.405190Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.405953Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.408746Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T21:45:02.570399Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.571267Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.574197Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T21:45:02.635402Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.636446Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.639286Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T21:45:02.652241Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.653146Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.656092Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T21:45:02.685100Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.686040Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.689005Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:02.750293Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.751803Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.754542Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:02.815745Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.816620Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.819455Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:02.832485Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.833327Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.835871Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:02.849293Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.850015Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.853542Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T21:45:02.882181Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.882828Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.885601Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T21:45:03.097178Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.097266Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.098235Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.098679Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.101288Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T21:45:03.103277Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:03.132706Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.133616Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.136261Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T21:45:03.165603Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.165699Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.166570Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.166962Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.169866Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T21:45:03.171354Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T21:45:03.198943Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.199743Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.200203Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.201146Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.204366Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T21:45:03.205200Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T21:45:03.265452Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.266369Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.268949Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T21:45:03.298247Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.299150Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.301856Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:03.413219Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.414118Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.416682Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T21:45:03.478190Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.479068Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.481833Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T21:45:03.593257Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.594115Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.597215Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:03.658460Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.659342Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.662047Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T21:45:03.691209Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.691985Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.694871Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:03.756074Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.756174Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.756945Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.757370Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.760060Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:03.761114Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:03.789399Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.789464Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.790208Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.790725Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.793514Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T21:45:03.795065Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T21:45:03.822711Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.823432Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.826517Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:03.855430Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.856128Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.858902Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T21:45:04.170695Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.171498Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.174159Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T21:45:04.187270Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.187999Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.190461Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T21:45:04.203754Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.204457Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.207422Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T21:45:04.220336Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.221056Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.223725Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:04.253072Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.253804Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.256359Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T21:45:04.285674Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.286426Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.288949Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T21:45:04.290066Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.290754Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.293333Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:04.354932Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.355658Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.358374Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:04.419767Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.420527Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.423358Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:04.452534Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.453222Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.456022Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T21:45:04.485258Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.485963Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.488595Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T21:45:04.517926Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.518617Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.521280Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T21:45:04.550473Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.714880Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.715543Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.718128Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T21:45:04.747449Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.861712Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.862315Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.864902Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:04.894233Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.158691Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.158777Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.159296Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.159803Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.162283Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T21:45:05.162972Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T21:45:05.191675Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.191734Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.191767Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.192272Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.194566Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T21:45:05.224137Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.338245Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.338745Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.341321Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T21:45:05.402737Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.017609Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.018143Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.020927Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T21:45:06.050089Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.050435Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.050595Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.051212Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.051719Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.055100Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:06.056492Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:06.057310Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:06.085002Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.085062Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.085088Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.085271Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.085488Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.087848Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:06.088745Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:06.118382Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.118442Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.118610Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.120528Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:06.150406Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.674000Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:18.970259Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:18.970259Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] 
[2026-06-03T21:45:18.970259Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:18.970347Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] 
[2026-06-03T21:45:18.970363Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:18.970372Z] [nf-52468ac99789087ea0eb1f4f278b2768-b4659-5mvkj] [587_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec