File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/1128117dd0b1e163b42ab13a774714/output/Logs/Info.log
Size
3.3 KB
Task
DAQ:BCL_TO_FASTQ:BCLCONVERT (REGRESSION;L003)
Attempt

Content

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2026-06-03T21:15:50Z thread 380 Sample sheet being processed by common lib? Yes
2026-06-03T21:15:50Z thread 380 SampleSheet Settings: 
2026-06-03T21:15:50Z thread 380   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T21:15:50Z thread 380 
2026-06-03T21:15:50Z thread 380 shared-thread-linux-native-asio output is disabled
2026-06-03T21:15:50Z thread 380 bcl-convert Version 4.4.6
2026-06-03T21:15:50Z thread 380 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T21:15:50Z thread 380 Command Line: --tiles s_3 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-03T21:15:50Z thread 380 Conversion Begins.
2026-06-03T21:15:50Z thread 380 Input BCL Information:
2026-06-03T21:15:50Z thread 380     Read Structure: 2026-06-03T21:15:50Z thread 380 Y1502026-06-03T21:15:50Z thread 380 ;2026-06-03T21:15:50Z thread 380 I82026-06-03T21:15:50Z thread 380 ;2026-06-03T21:15:50Z thread 380 I82026-06-03T21:15:50Z thread 380 ;2026-06-03T21:15:50Z thread 380 Y1502026-06-03T21:15:50Z thread 380 
2026-06-03T21:15:50Z thread 380     RunInfo.xml file lists: 8 lanes, 8 tiles
2026-06-03T21:15:50Z thread 380     BCL file format: bcl.gz
2026-06-03T21:15:50Z thread 380     Positions file format: locs
2026-06-03T21:15:50Z thread 380     Filter file format: filter
2026-06-03T21:15:50Z thread 380 Conversion Information:
2026-06-03T21:15:50Z thread 380     Tile filtering: converting 1/8 tiles
2026-06-03T21:15:50Z thread 380     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:50Z thread 380     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:50Z thread 380     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:50Z thread 380     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:50Z thread 380     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:50Z thread 380     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:50Z thread 380     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:50Z thread 380     Sample Count: 4
2026-06-03T21:15:50Z thread 380     Expected number of sample FASTQ files to be created: 8
2026-06-03T21:15:50Z thread 380 # CPU hw threads available: 64
2026-06-03T21:15:50Z thread 380 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T21:15:50Z thread 380 SW compressors: 64
2026-06-03T21:15:50Z thread 380 SW decompressors: 32
2026-06-03T21:15:50Z thread 380 SW FASTQ compression level: 1
2026-06-03T21:15:51Z thread 380 Lane 3 Post-run Information:
2026-06-03T21:15:51Z thread 380     Total clusters: 250000
2026-06-03T21:15:51Z thread 380     Total Genomic Reads: 500000
2026-06-03T21:15:51Z thread 380     Total Genomic Input Gigabases 0.08
2026-06-03T21:15:51Z thread 380     Minimum reads for a sample: 124466
2026-06-03T21:15:51Z thread 380     Maximum reads for a sample: 125798
2026-06-03T21:15:51Z thread 380     Average reads per sample: 125000.00
2026-06-03T21:15:51Z thread 380     Undetermined reads: 0
2026-06-03T21:15:51Z thread 380 Conversion Complete.