.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e065f5d197d4f8f46ccaa00d6cb210/.command.err
Size: 63.3 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)
Attempt
Content

[2026-06-03T21:45:03.701834Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:03.702893Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:03.702914Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:03.702919Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:03.702924Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXk5MTmN'
[2026-06-03T21:45:03.702928Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:03.702935Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:03.702939Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:03.702942Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:03.702947Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:03.702952Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:03.702956Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:03.702961Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:03.702965Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:03.703439Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:03.703561Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:03.709612Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:03.710286Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:03.710558Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:03.710720Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:03.710897Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711295Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711389Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711461Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711578Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711645Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711766Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711828Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711941Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.712007Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.712187Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.712631Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.712779Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.713069Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.713379Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.713983Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.714054Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.714213Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.716135Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.716895Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:03.717205Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.717381Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.717593Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.717905Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718023Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718088Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718205Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718269Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718380Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718444Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718553Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718620Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718744Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718810Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718938Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.719099Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.719696Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.719838Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.719966Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.720036Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.720163Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.720225Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.720350Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.720419Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.721315Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.721658Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.721812Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.721890Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722103Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722170Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722278Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722342Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722453Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722516Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722686Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723137Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723255Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723322Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723431Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723494Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723606Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723670Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723782Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723849Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.723958Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.724026Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.724140Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.724219Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.741568Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.741892Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.742108Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.742777Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.742848Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.742938Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.743012Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.744887Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.745801Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.745944Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.746096Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:03.746857Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.747567Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.748375Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.749298Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.750866Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.751830Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.752968Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.754197Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.756676Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T21:45:03.761915Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T21:45:03.762446Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T21:45:03.767089Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:03.771100Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T21:45:03.773994Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T21:45:03.774792Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:03.777061Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T21:45:03.890619Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.891524Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.895153Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:04.006332Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.007341Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.010613Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:04.874775Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.875809Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.879761Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T21:45:05.192014Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.193075Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.197161Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T21:45:06.010154Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.011716Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.015446Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T21:45:06.076558Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.076836Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.078647Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.079201Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.083780Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T21:45:06.193764Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.194944Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.199118Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:06.260025Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.261470Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.265408Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:06.266358Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.267561Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.270310Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:06.331942Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.332071Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.332149Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.333595Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.334049Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.334465Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.338729Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T21:45:06.340472Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T21:45:06.341336Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T21:45:06.399645Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.400702Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.404649Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T21:45:06.409097Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.410098Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.413549Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:06.574785Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.575823Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.579199Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T21:45:06.640468Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.641708Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.645368Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:06.706521Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.707579Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.711235Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T21:45:06.772321Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.774084Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.777271Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:06.838569Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.839473Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.842946Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T21:45:06.904370Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.905288Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.909174Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T21:45:07.622108Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.623028Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.626480Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:07.787895Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.788797Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.792205Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T21:45:08.055785Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.056667Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.059497Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:08.171336Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.172102Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.174866Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T21:45:08.236402Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.237287Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.239934Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:08.301770Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.302576Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.305583Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T21:45:08.334870Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.335653Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.338234Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T21:45:08.399835Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.400534Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.403555Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:08.464856Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.465655Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.469097Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T21:45:08.630641Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.631384Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.634317Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T21:45:08.695624Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.696410Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.699775Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T21:45:09.073820Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:09.112151Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.112285Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.112954Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.113275Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.116072Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T21:45:09.117039Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:09.146117Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.146207Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.146913Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.147328Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.150467Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:09.151597Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T21:45:09.211795Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.211887Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.212534Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.212803Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.216675Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:09.217128Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.217696Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T21:45:09.217922Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.220540Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:09.249943Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.250026Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.250607Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.250918Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.254012Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T21:45:09.366258Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.367028Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.369872Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T21:45:09.399182Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.399778Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.402640Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T21:45:09.432064Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.432731Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.435625Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:09.497077Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.497702Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.500809Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:09.562167Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.562774Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.565707Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:09.626990Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.627587Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.631238Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T21:45:10.243985Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.244592Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.248047Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:10.308793Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.309466Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.312511Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:10.373698Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.374284Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.377665Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:10.839949Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.840533Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.843591Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T21:45:10.872717Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.873263Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.875977Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T21:45:10.889653Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.890194Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.893133Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T21:45:10.922288Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.086793Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.087322Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.090209Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T21:45:11.119471Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.122306Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T21:45:11.123195Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.123262Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.123649Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.126286Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T21:45:11.155470Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.155559Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.155992Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.158778Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:11.187866Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.252197Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.252677Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.255186Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T21:45:11.284477Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.284550Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.284992Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.287243Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T21:45:11.316851Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.831912Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.832379Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.835175Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:11.864298Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.864558Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.864692Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.864945Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.865413Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.869857Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:11.870070Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:11.870756Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:11.899448Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.899509Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.899530Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.899720Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.900253Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.902003Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:11.903930Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:11.933199Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.933261Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.933439Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.935541Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:11.965283Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.334620Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:22.591297Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:22.591297Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] 
[2026-06-03T21:45:22.591297Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:22.591360Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] 
[2026-06-03T21:45:22.591367Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:22.591374Z] [nf-36e065f5d197d4f8f46ccaa00d6cb210-50b7f-g5s6b] [587_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec