Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/e288446ef1e4ec49a017b5ac0668b3/.command.sh Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/8ee7221cb00667c7914a883215e2de/HCC1395_BL.recalibrated.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/8ee7221cb00667c7914a883215e2de/HCC1395_BL.recalibrated.bam Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/e288446ef1e4ec49a017b5ac0668b3/.command.run ==> STAGING COMPLETE (10 inputs) Successfully created workflow run script. To execute the workflow, run the following script and set appropriate options: /var/tmp/strelka/runWorkflow.py [2026-06-03T21:45:03.440124Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Initiating pyFlow run [2026-06-03T21:45:03.440702Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow [2026-06-03T21:45:03.440715Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] pyFlowVersion: 1.1.20 [2026-06-03T21:45:03.440720Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0 [2026-06-03T21:45:03.440724Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXoAqVEZ' [2026-06-03T21:45:03.440728Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8' [2026-06-03T21:45:03.440734Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] mode: local [2026-06-03T21:45:03.440738Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] nCores: 8 [2026-06-03T21:45:03.440741Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] memMb: 1523736 [2026-06-03T21:45:03.440745Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data [2026-06-03T21:45:03.440749Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] isDryRun: False [2026-06-03T21:45:03.440752Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] isContinue: False [2026-06-03T21:45:03.440756Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] isForceContinue: True [2026-06-03T21:45:03.440760Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [RunParameters] mailTo: '' [2026-06-03T21:45:03.441404Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow [2026-06-03T21:45:03.441671Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10 [2026-06-03T21:45:03.447955Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow [2026-06-03T21:45:03.448545Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow [2026-06-03T21:45:03.448840Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow [2026-06-03T21:45:03.449141Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow [2026-06-03T21:45:03.449484Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.450207Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.450305Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.450379Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.450496Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.450714Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.451067Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.451224Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.451308Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.451427Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.451837Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.452289Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.452512Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.454358Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.454764Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.455014Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node [2026-06-03T21:45:03.455143Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.455219Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.455333Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.455395Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.455588Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.455659Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.455985Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456288Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456404Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456468Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456622Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456698Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456809Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456872Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.456993Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.457075Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.457185Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.457252Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.457436Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.457669Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.458155Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.458489Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.458607Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.458671Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.458780Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.458843Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.458957Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.459024Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.459132Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.459195Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.459305Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.459372Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.459642Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460030Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460141Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460203Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460311Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460373Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460490Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460552Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460661Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460726Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460830Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.460893Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.461021Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.461144Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.461703Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.461770Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.461876Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.461944Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462051Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462112Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462218Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462281Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462388Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462449Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462556Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.462619Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.480207Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.480605Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.480737Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.480968Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.481210Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.481780Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.482083Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.482300Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.482529Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.482794Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.483207Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.483839Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.484508Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome' [2026-06-03T21:45:03.484724Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.485328Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow [2026-06-03T21:45:03.485590Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.486477Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.487551Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.489059Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.492655Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node [2026-06-03T21:45:03.494988Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node [2026-06-03T21:45:03.498409Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node [2026-06-03T21:45:03.502805Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node [2026-06-03T21:45:03.503385Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node [2026-06-03T21:45:03.507640Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node [2026-06-03T21:45:03.510936Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node [2026-06-03T21:45:03.511815Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node [2026-06-03T21:45:04.126121Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.127561Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.131329Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node [2026-06-03T21:45:04.192292Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.193490Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.196991Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node [2026-06-03T21:45:04.809632Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.811132Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.814152Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node [2026-06-03T21:45:04.843324Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.844433Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.848026Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node [2026-06-03T21:45:04.848527Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.849862Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.852864Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node [2026-06-03T21:45:04.865841Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.867263Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.870961Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node [2026-06-03T21:45:04.883611Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.884663Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.887575Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node [2026-06-03T21:45:04.949038Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.950063Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.953365Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node [2026-06-03T21:45:04.954076Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.954779Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.958148Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node [2026-06-03T21:45:04.988999Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.990130Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.993746Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node [2026-06-03T21:45:05.355617Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.357377Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.361237Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node [2026-06-03T21:45:05.361900Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.362880Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.366353Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node [2026-06-03T21:45:05.395491Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.397554Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.400116Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.401331Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.401662Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node [2026-06-03T21:45:05.404607Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node [2026-06-03T21:45:05.466003Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.466206Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.468698Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.469341Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.473180Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node [2026-06-03T21:45:05.474340Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node [2026-06-03T21:45:05.534603Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.536424Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.540559Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node [2026-06-03T21:45:05.601784Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.602919Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.606964Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node [2026-06-03T21:45:06.420047Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.420866Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.424443Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node [2026-06-03T21:45:06.485796Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.487249Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.490894Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node [2026-06-03T21:45:06.552225Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.553344Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.556655Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node [2026-06-03T21:45:06.618110Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.619024Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.623131Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node [2026-06-03T21:45:06.935149Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.935941Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.939799Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node [2026-06-03T21:45:07.201789Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.202851Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.206143Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node [2026-06-03T21:45:07.235200Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.236238Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.239807Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node [2026-06-03T21:45:07.351153Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.352079Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.354876Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node [2026-06-03T21:45:07.416301Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.417375Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.420589Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node [2026-06-03T21:45:07.531861Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.532863Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.536075Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node [2026-06-03T21:45:07.747434Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.747547Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.748477Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.748882Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.752232Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node [2026-06-03T21:45:07.753842Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node [2026-06-03T21:45:07.813217Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.813305Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.813334Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.814191Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.814452Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.814774Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.818815Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node [2026-06-03T21:45:07.820278Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node [2026-06-03T21:45:07.821087Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node [2026-06-03T21:45:07.879496Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.880417Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.883523Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node [2026-06-03T21:45:07.944756Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.944861Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.945845Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.946164Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.949621Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node [2026-06-03T21:45:07.950662Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node [2026-06-03T21:45:08.010789Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.011709Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.014881Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node [2026-06-03T21:45:08.076024Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.076991Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.080018Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node [2026-06-03T21:45:08.141212Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.141994Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.145009Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node [2026-06-03T21:45:08.206081Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.206951Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.210070Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node [2026-06-03T21:45:08.371283Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.372072Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.375307Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node [2026-06-03T21:45:08.837310Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.838146Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.841329Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node [2026-06-03T21:45:08.902495Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.903323Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.907197Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node [2026-06-03T21:45:09.118321Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.119166Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.122302Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node [2026-06-03T21:45:09.151226Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.151315Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.151365Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.152032Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.152311Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.152844Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.157230Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node [2026-06-03T21:45:09.157506Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node [2026-06-03T21:45:09.158310Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node [2026-06-03T21:45:09.185266Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.185960Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.189082Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node [2026-06-03T21:45:09.190153Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.190201Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.190767Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.191121Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.193726Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node [2026-06-03T21:45:09.194487Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node [2026-06-03T21:45:09.223292Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.223980Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.224547Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.225286Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.228531Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node [2026-06-03T21:45:09.230053Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node [2026-06-03T21:45:09.257458Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.258127Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.260083Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.260813Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.261071Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node [2026-06-03T21:45:09.263576Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node [2026-06-03T21:45:09.292866Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.293519Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.296424Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node [2026-06-03T21:45:09.297114Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.297673Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.300252Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node [2026-06-03T21:45:09.301157Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.301682Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.305377Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node [2026-06-03T21:45:09.333457Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.333543Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.334117Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.334419Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.337409Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node [2026-06-03T21:45:09.338596Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node [2026-06-03T21:45:09.398722Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.398801Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.713395Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.714064Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.717291Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node [2026-06-03T21:45:09.778200Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.810249Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.810904Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.814216Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node [2026-06-03T21:45:09.875270Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.189951Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.190565Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.193652Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node [2026-06-03T21:45:10.222625Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.687499Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.688045Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.691039Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node [2026-06-03T21:45:10.752032Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.816093Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.816649Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.819410Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node [2026-06-03T21:45:10.848579Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.112940Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.113452Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:11.115901Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node [2026-06-03T21:45:11.145314Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.145683Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.145860Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome' [2026-06-03T21:45:11.146177Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:11.146719Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:11.150805Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node [2026-06-03T21:45:11.152388Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node [2026-06-03T21:45:11.153143Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node [2026-06-03T21:45:11.178939Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.179010Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.179036Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.179275Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:11.179614Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:11.182543Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node [2026-06-03T21:45:11.183398Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node [2026-06-03T21:45:11.211691Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.211756Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:11.211988Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome' [2026-06-03T21:45:11.214303Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node [2026-06-03T21:45:11.243718Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:14.061759Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow [2026-06-03T21:45:22.329658Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Strelka somatic workflow successfully completed. [2026-06-03T21:45:22.329658Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [2026-06-03T21:45:22.329658Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] workflow version: 2.9.10 [2026-06-03T21:45:22.329730Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] [2026-06-03T21:45:22.329744Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Workflow successfully completed all tasks [2026-06-03T21:45:22.329750Z] [nf-2ee288446ef1e4ec49a017b5ac0668b3-d178c-7gglg] [576_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec