cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:161000001, elapsed 0.1s, est remaining 1.9s, peak mem 317MB, user 0.3s, sys 2.4s, output queue size 8
progress 10% @chr2:71000001, elapsed 0.2s, est remaining 1.7s, peak mem 525MB, user 0.5s, sys 4.7s, output queue size 41
progress 15% @chr2:233000001, elapsed 0.3s, est remaining 1.5s, peak mem 651MB, user 0.8s, sys 7.0s, output queue size 2
progress 20% @chr3:156000001, elapsed 0.3s, est remaining 1.4s, peak mem 795MB, user 1.1s, sys 9.1s, output queue size 17
progress 25% @chr4:114000001, elapsed 0.4s, est remaining 1.3s, peak mem 917MB, user 1.3s, sys 11.4s, output queue size 1
progress 30% @chr5:86000001, elapsed 0.5s, est remaining 1.2s, peak mem 968MB, user 1.5s, sys 13.6s, output queue size 11
progress 35% @chr6:64000001, elapsed 0.6s, est remaining 1.1s, peak mem 1011MB, user 1.8s, sys 15.8s, output queue size 1
progress 40% @chr7:56000001, elapsed 0.7s, est remaining 1.0s, peak mem 1079MB, user 2.0s, sys 18.0s, output queue size 2
progress 45% @chr8:57000001, elapsed 0.7s, est remaining 0.9s, peak mem 1163MB, user 2.3s, sys 20.2s, output queue size 65
progress 50% @chr9:74000001, elapsed 0.8s, est remaining 0.8s, peak mem 1241MB, user 2.5s, sys 22.5s, output queue size 1
progress 55% @chr10:95000001, elapsed 0.9s, est remaining 0.7s, peak mem 1296MB, user 2.8s, sys 24.6s, output queue size 1
progress 60% @chr11:119000001, elapsed 1.0s, est remaining 0.7s, peak mem 1362MB, user 3.0s, sys 27.1s, output queue size 4
progress 65% @chr13:10000001, elapsed 1.1s, est remaining 0.6s, peak mem 1473MB, user 3.3s, sys 29.9s, output queue size 5
progress 70% @chr14:56000001, elapsed 1.2s, est remaining 0.5s, peak mem 1520MB, user 3.5s, sys 32.6s, output queue size 6
progress 75% @chr16:7000001, elapsed 1.3s, est remaining 0.4s, peak mem 1559MB, user 3.7s, sys 35.4s, output queue size 14
progress 80% @chr17:73000001, elapsed 1.4s, est remaining 0.3s, peak mem 1580MB, user 4.0s, sys 38.2s, output queue size 11
progress 85% @chr20:39000001, elapsed 1.5s, est remaining 0.3s, peak mem 1652MB, user 4.2s, sys 40.9s, output queue size 8
progress 90% @chrX:46000001, elapsed 1.9s, est remaining 0.2s, peak mem 2792MB, user 8.1s, sys 42.5s, output queue size 114
progress 95% @chrY:43000001, elapsed 2.0s, est remaining 0.1s, peak mem 2816MB, user 10.0s, sys 43.3s, output queue size 276
progress 100% @chr21:41000001, elapsed 3.3s, est remaining 0.0s, peak mem 2837MB, user 23.7s, sys 44.6s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290604
output file size: 74586807
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.017 real
ReadQualCal::delayed_init: 1 calls 0.003 user 0.001 sys 0.014 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.007 real
advance: 3219322 calls 1.990 user 5.719 sys 7.402 real
done: 1 calls 0.434 user 0.316 sys 0.751 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.000 sys 3.335 real
fetch: 3219322 calls 0.232 user 5.372 sys 5.617 real
fetch_reads: 3219322 calls 0.459 user 4.920 sys 5.720 real
fetch_ref: 13318 calls 0.031 user 0.012 sys 0.060 real
fetch_vcf: 13318 calls 1.563 user 0.020 sys 1.676 real
idle: 2254 calls 3.939 user 0.403 sys 55.980 real
init: 1 calls 0.006 user 0.001 sys 0.021 real
update: 13537 calls 7.344 user 1.562 sys 9.999 real
write: 3219322 calls 7.975 user 5.244 sys 13.130 real
overall: 2975178752 mem 32.037 user 45.631 sys 4.712 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.001 sys 0.031 real
done: 1 calls 0.049 user 0.021 sys 0.069 real
idle: 60 calls 0.001 user 0.000 sys 31.358 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.073 user 0.052 sys 1.052 real