.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/7084dcdfd76f384ce8b4fa962ff111/.command.err
Size: 63.3 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt
Content

[2026-06-03T21:45:00.311561Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:00.320318Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:00.320334Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:00.320339Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:00.320343Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAGVcwM'
[2026-06-03T21:45:00.320347Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:00.320352Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:00.320355Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:00.320359Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:00.320363Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:00.320373Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:00.320376Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:00.320380Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:00.320385Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:00.320908Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:00.321052Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:00.326745Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:00.327451Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:00.327606Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:00.327872Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:00.328123Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.328495Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.328588Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.328659Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.328777Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.328844Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.328986Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.329056Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.329261Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.329542Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.329651Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.330022Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.330310Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.331829Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.332341Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.332524Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:00.332962Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333202Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333321Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333383Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333567Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333636Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333748Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333815Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333923Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.333985Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.334100Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.334164Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.334446Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.334688Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.334799Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.334889Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335004Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335066Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335174Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335238Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335353Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335415Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335522Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335588Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335719Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.335815Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.336263Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.336331Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.336861Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.336950Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.337078Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.337202Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.337433Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.337824Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.337938Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338006Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338117Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338180Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338288Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338350Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338465Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338531Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338641Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338706Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338835Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.338934Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.339464Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.339530Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.339638Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.339705Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.339812Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.339874Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.355224Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.355576Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.355644Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.355801Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.355868Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.355953Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.357184Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.357638Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.357830Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.358487Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:00.358664Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.358745Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:00.359122Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.360128Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.361276Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.362385Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.364338Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T21:45:00.364807Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.366826Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.368589Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:00.371334Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T21:45:00.372365Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.374220Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:00.376560Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T21:45:00.379717Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:00.381871Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T21:45:00.384180Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T21:45:00.447508Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.447556Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.447577Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.448155Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.448543Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.448818Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.452888Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:00.455509Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T21:45:00.455929Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:00.515208Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.515282Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.515983Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.516249Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.519648Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T21:45:00.520465Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T21:45:01.283224Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.284064Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.287394Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:01.348577Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.349411Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.352429Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T21:45:01.413746Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.414536Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.417383Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:01.980010Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.980785Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.984041Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T21:45:02.245954Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.246819Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.249986Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:02.361328Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.362132Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.365333Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T21:45:02.426409Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.426496Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.427259Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.427537Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.430638Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T21:45:02.431703Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:02.460062Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.460815Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.463723Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:02.725357Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.726200Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.729752Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T21:45:02.790702Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.790781Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.791534Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.792290Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.795884Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:02.797209Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:02.858642Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.859353Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.862124Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T21:45:02.923547Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.924380Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.927459Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T21:45:02.956896Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.957680Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.960875Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T21:45:02.990087Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.990850Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.994264Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T21:45:03.406381Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.407360Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.410303Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:03.471557Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.472577Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.475216Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:03.536915Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.537845Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.540896Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T21:45:03.652808Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.653584Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.656552Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:03.717734Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.717819Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.718492Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.719129Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.722379Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T21:45:03.723409Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T21:45:03.834886Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.835676Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.838953Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:03.868344Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.869181Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.872727Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T21:45:04.034130Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.034860Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.037946Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:04.099446Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.099537Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.100300Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.100779Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.104279Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T21:45:04.105269Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T21:45:04.135038Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.135755Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.138783Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T21:45:04.200276Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.201101Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.204723Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T21:45:04.567005Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.567982Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.571846Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T21:45:04.683004Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.684482Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.688045Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T21:45:04.749423Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.750521Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.753659Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:04.814965Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.815860Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.819744Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:04.880751Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.881925Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.885138Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T21:45:04.996740Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.998075Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.002171Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T21:45:05.765085Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.766017Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.769564Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:05.830728Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.831802Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.835308Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T21:45:05.896655Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.898000Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.901940Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T21:45:05.962768Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.963759Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.967887Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:06.129320Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.129448Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.130130Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.130511Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.134018Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T21:45:06.135151Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:06.195353Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.195477Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.196190Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.196569Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.200305Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T21:45:06.241609Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T21:45:06.261159Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.261263Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.261868Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.262257Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.265696Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:06.266850Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:06.328264Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.328379Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.328966Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.329268Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.332417Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:06.333573Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:06.393735Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.393830Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.394438Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.397930Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T21:45:06.459032Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.459175Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.459910Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.464442Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T21:45:06.524604Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.524741Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.525455Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.528668Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T21:45:06.590264Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.905436Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.906018Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.909575Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T21:45:06.938437Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.403941Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.404679Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.407932Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T21:45:07.469258Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.884488Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.885097Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.888097Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:07.949809Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.214773Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.215327Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.217992Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T21:45:08.279582Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.279916Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.280107Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.280422Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.280805Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.284976Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.286361Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.287560Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:08.316001Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.316100Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.316129Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.316404Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.316799Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.320086Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.320912Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.350950Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.351030Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.351265Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.354023Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:08.415435Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.937554Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:19.208869Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:19.208869Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] 
[2026-06-03T21:45:19.208869Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:19.208942Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] 
[2026-06-03T21:45:19.208956Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:19.208963Z] [nf-877084dcdfd76f384ce8b4fa962ff111-fe92b-rnnrx] [600_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec