mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-x1vffcpv because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:48:26,299 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:48:27,322 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:48:27,523 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:48:28,879 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:48:28,959 - cnv_pipe.batch.run_model - INFO - Processing cluster 562 with 190 probes
2026-06-03 21:48:29,446 - cnv_pipe.batch.run_model.cluster562 - INFO - Child process started for cluster 562 with 190 probes
2026-06-03 21:49:41,734 - cnv_pipe.batch.run_model.cluster562 - INFO - Child process finished cluster 562. Wrote cluster_562_samples.csv and cluster_562_params.csv
2026-06-03 21:49:41,735 - cnv_pipe.batch.run_model - INFO - Cluster 562 finished in 72.78 seconds. Status: SUCCESS