cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
Received only 31 licenses out of 96 requested for sentieon:TNhaplotyper
progress 5% @chr1:170000001, elapsed 0.1s, est remaining 1.0s, peak mem 223MB, user 0.1s, sys 1.2s, output queue size 35
progress 10% @chr2:60000001, elapsed 0.1s, est remaining 0.9s, peak mem 223MB, user 0.2s, sys 2.4s, output queue size 20
progress 15% @chr2:224000001, elapsed 0.1s, est remaining 0.8s, peak mem 223MB, user 0.3s, sys 3.7s, output queue size 29
progress 20% @chr3:147000001, elapsed 0.2s, est remaining 0.8s, peak mem 223MB, user 0.4s, sys 5.1s, output queue size 20
progress 25% @chr4:116000001, elapsed 0.3s, est remaining 0.8s, peak mem 223MB, user 0.5s, sys 6.3s, output queue size 40
progress 30% @chr5:104000001, elapsed 0.3s, est remaining 0.7s, peak mem 223MB, user 0.6s, sys 7.5s, output queue size 10
progress 35% @chr6:81000001, elapsed 0.4s, est remaining 0.7s, peak mem 223MB, user 0.7s, sys 8.8s, output queue size 18
progress 40% @chr7:34000001, elapsed 0.4s, est remaining 0.6s, peak mem 223MB, user 0.8s, sys 10.3s, output queue size 21
progress 45% @chr8:70000001, elapsed 0.5s, est remaining 0.6s, peak mem 223MB, user 0.9s, sys 11.5s, output queue size 25
progress 50% @chr9:86000001, elapsed 0.5s, est remaining 0.5s, peak mem 223MB, user 1.0s, sys 12.9s, output queue size 37
progress 55% @chr10:104000001, elapsed 0.6s, est remaining 0.5s, peak mem 223MB, user 1.0s, sys 14.2s, output queue size 12
progress 60% @chr11:106000001, elapsed 0.6s, est remaining 0.4s, peak mem 223MB, user 1.2s, sys 15.5s, output queue size 17
progress 65% @chr12:130000001, elapsed 0.7s, est remaining 0.4s, peak mem 223MB, user 1.2s, sys 16.9s, output queue size 19
progress 70% @chr14:43000001, elapsed 0.7s, est remaining 0.3s, peak mem 223MB, user 1.3s, sys 18.2s, output queue size 18
progress 75% @chr16:1, elapsed 0.8s, est remaining 0.3s, peak mem 223MB, user 1.4s, sys 19.5s, output queue size 34
progress 80% @chr18:12000001, elapsed 0.8s, est remaining 0.2s, peak mem 223MB, user 1.5s, sys 20.8s, output queue size 14
progress 85% @chr20:7000001, elapsed 0.8s, est remaining 0.1s, peak mem 223MB, user 1.7s, sys 22.0s, output queue size 24
progress 90% @chrX:11000001, elapsed 0.9s, est remaining 0.1s, peak mem 223MB, user 1.9s, sys 23.3s, output queue size 37
progress 95% @chrY:12000001, elapsed 0.9s, est remaining 0.0s, peak mem 223MB, user 2.0s, sys 24.7s, output queue size 22
progress 100% @HLA-DQA1*01:10:1, elapsed 1.1s, est remaining 0.0s, peak mem 224MB, user 2.1s, sys 27.1s, output queue size 1771
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 00050657
  features: bfebfbff 7ffefbff
  extended: d39ff7eb 00000818
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 96 max 96
algo: TNfilter
license: sentieon:TNhaplotyper=31
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.013 user 0.000 sys 0.019 real
"predict_filter": 171 calls 0.009 user 0.000 sys 0.009 real
advance: 3219322 calls 0.381 user 12.259 sys 13.473 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.001 sys 1.106 real
fetch_ref: 448 calls 0.002 user 0.002 sys 0.008 real
idle: 5797 calls 0.088 user 0.047 sys 1826.486 real
init: 1 calls 0.239 user 0.026 sys 60.311 real
overall: 235569152 mem 3.135 user 28.460 sys 120.162 real