Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/84b552ba8175e0fa90865c45bde58c/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/f98280b187fad651e4bdafbe9acb0c/germline_control_1.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/32a5ed1750e61a116a0e2c4769877c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/32a5ed1750e61a116a0e2c4769877c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/f98280b187fad651e4bdafbe9acb0c/germline_control_1.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/84b552ba8175e0fa90865c45bde58c/germline_control_1.haplotyper.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   358 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to germline_control_1.dv_only_sites.vcf.gz