Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4054179d8c2faede8275f03a3b1080/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/19c833027b025a79953c03cc032797/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/19c833027b025a79953c03cc032797/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-1f6fxn1i because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:49:56,072 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:49:56,908 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:49:57,082 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:49:58,006 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:49:58,177 - cnv_pipe.batch.run_model - INFO - Processing cluster 1054 with 124 probes
2026-06-03 21:49:58,561 - cnv_pipe.batch.run_model.cluster1054 - INFO - Child process started for cluster 1054 with 124 probes
2026-06-03 21:50:38,240 - cnv_pipe.batch.run_model.cluster1054 - INFO - Child process finished cluster 1054. Wrote cluster_1054_samples.csv and cluster_1054_params.csv
2026-06-03 21:50:38,241 - cnv_pipe.batch.run_model - INFO - Cluster 1054 finished in 40.06 seconds. Status: SUCCESS