File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/53a8a57123e0d3858424dd9696f55b/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-c8atf4aa because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:49:48,247 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:49:49,072 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:49:49,245 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:49:50,171 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:49:50,337 - cnv_pipe.batch.run_model - INFO - Processing cluster 1007 with 198 probes
2026-06-03 21:49:50,736 - cnv_pipe.batch.run_model.cluster1007 - INFO - Child process started for cluster 1007 with 198 probes
2026-06-03 21:50:48,907 - cnv_pipe.batch.run_model.cluster1007 - INFO - Child process finished cluster 1007. Wrote cluster_1007_samples.csv and cluster_1007_params.csv
2026-06-03 21:50:48,908 - cnv_pipe.batch.run_model - INFO - Cluster 1007 finished in 58.57 seconds. Status: SUCCESS