Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/0e7b9261bfde1edf44bc2c5ea01e1f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/809d751aeb72e07b18cf210d81fa33/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/0e7b9261bfde1edf44bc2c5ea01e1f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/0576ae5fb76fcc8c6a05f6e82f968f/germline_control_2.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/809d751aeb72e07b18cf210d81fa33/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/0576ae5fb76fcc8c6a05f6e82f968f/germline_control_2.forcecall.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.uE0YGJ
Merging 1 temporary files
Done
Cleaning