.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/edd8c8659753ecdd2524025fc25952/.command.log
Size: 87.4 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/edd8c8659753ecdd2524025fc25952/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/f8e7931c441b58d5eba8c2dd0f8018/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/f8e7931c441b58d5eba8c2dd0f8018/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/edd8c8659753ecdd2524025fc25952/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T21:45:01.625809Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:01.642495Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:01.642531Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:01.642540Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:01.642544Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXFJr3cn'
[2026-06-03T21:45:01.642549Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:01.642554Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:01.642557Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:01.642562Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:01.642566Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:01.642570Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:01.642574Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:01.642578Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:01.642582Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:01.643321Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:01.643418Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:01.649176Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:01.649902Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:01.650395Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:01.650727Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:01.650994Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.651422Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.651511Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.651582Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.651699Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.651766Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.651886Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.651948Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.652069Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.652273Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.652634Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.652815Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.652907Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.653443Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.653818Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.655599Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.656071Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:01.656316Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.656636Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.656701Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.656891Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.656961Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657077Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657144Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657252Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657313Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657433Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657497Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657659Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.657776Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658154Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658248Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658363Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658431Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658546Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658609Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658718Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658782Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658889Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.658954Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.659069Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.659466Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660020Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660111Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660229Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660290Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660420Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660485Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660653Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660720Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660825Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660888Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.660995Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.661056Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.661164Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.661255Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.661469Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.661916Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662025Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662089Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662199Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662257Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662365Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662429Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662534Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662599Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662714Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662776Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.662884Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.663008Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.663672Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.663743Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.663849Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.663912Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.665252Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.665871Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666010Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666083Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666196Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666261Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666372Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666433Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666545Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666608Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666717Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.666818Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.667175Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.667718Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.667829Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.667900Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.668017Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.668079Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.668185Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.668501Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.668621Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.668684Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.684807Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.685444Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.685622Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.686492Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.686715Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.686946Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.687407Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.687654Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.688087Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.688260Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.688585Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.689245Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.690280Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.690566Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.691348Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.691671Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.692142Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:01.693100Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.695699Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.696331Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T21:45:01.699893Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T21:45:01.703123Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T21:45:01.706672Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T21:45:01.707454Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T21:45:01.709710Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T21:45:01.713328Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T21:45:01.713808Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T21:45:02.379831Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.380874Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.383954Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T21:45:02.445110Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446225Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449093Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T21:45:02.661016Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.662187Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.665462Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T21:45:02.776587Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.777594Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.780568Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T21:45:02.841900Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.842969Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.845620Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T21:45:02.907270Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.907401Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.908805Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.909122Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.911972Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T21:45:02.913107Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T21:45:02.941161Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.942448Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.945433Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T21:45:03.006688Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.008209Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.011153Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T21:45:03.024124Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.025674Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.028605Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T21:45:03.041539Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.042858Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.045543Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T21:45:03.106919Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.108184Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.110963Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T21:45:03.140146Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.141359Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.143898Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T21:45:03.255456Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.255633Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.256868Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.257180Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.260284Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T21:45:03.261764Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T21:45:03.289490Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.290845Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.293578Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T21:45:03.755989Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.757363Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.760408Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T21:45:03.789348Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.790741Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.793769Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T21:45:03.905206Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.906244Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.908879Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T21:45:03.938429Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.939354Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.941858Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T21:45:03.971621Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.971719Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.972610Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.972834Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.975683Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T21:45:03.976800Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T21:45:04.006152Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.006229Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.007081Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.007648Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.010863Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T21:45:04.012003Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T21:45:04.224124Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.225119Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.228048Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T21:45:04.257369Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.258248Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.261057Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T21:45:04.322646Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.323551Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.326306Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T21:45:04.356684Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.357481Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.360508Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T21:45:04.422198Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.423198Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.426905Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T21:45:04.439492Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.440285Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.442684Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T21:45:04.472376Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.472453Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.473265Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.473610Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.476723Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T21:45:04.477715Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T21:45:04.506500Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.506584Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.507365Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.507648Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.510706Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T21:45:04.511918Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T21:45:04.540209Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.541090Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.544050Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T21:45:04.956238Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.957174Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.960061Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T21:45:04.989180Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.990048Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.993031Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T21:45:05.023475Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.024313Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.027304Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T21:45:05.088689Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.089543Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.092452Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T21:45:05.121681Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.122510Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.125086Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T21:45:05.154510Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.155356Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.158191Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T21:45:05.319652Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.320498Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.323478Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T21:45:05.535364Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.536249Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.539508Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T21:45:05.568712Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.569514Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.572267Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T21:45:05.601743Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.602529Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.605411Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T21:45:05.716891Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.717715Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.721084Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T21:45:05.882499Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.883352Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.886323Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T21:45:06.148583Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.149409Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.152524Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T21:45:06.181736Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.182534Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.185371Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T21:45:06.246578Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.246656Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.247345Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.247723Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.250873Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T21:45:06.251877Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T21:45:06.281137Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.281216Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.281882Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.282194Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.285211Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T21:45:06.286185Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T21:45:06.298903Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.299612Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.302387Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T21:45:06.363748Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.364557Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.367468Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T21:45:06.428857Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.428947Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.429649Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.430214Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.433828Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T21:45:06.434025Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.434500Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T21:45:06.434856Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.437048Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T21:45:06.466719Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.466799Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.467417Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.467787Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.470711Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T21:45:06.471550Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T21:45:06.500250Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.500936Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.503613Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T21:45:06.565115Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.566111Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.569248Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T21:45:06.680305Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.681190Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.684428Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T21:45:06.697281Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.698135Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.700917Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T21:45:06.713967Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.714742Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.717808Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T21:45:06.746639Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.747447Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.750520Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T21:45:06.779549Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.780400Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.783631Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T21:45:06.894634Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.895629Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.898625Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T21:45:06.927809Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.928618Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.931152Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T21:45:06.960562Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.961372Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.964020Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T21:45:06.969065Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.969819Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.972220Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T21:45:07.001714Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.001797Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.001845Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.002590Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.002877Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.004447Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.005492Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T21:45:07.008177Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T21:45:07.009079Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T21:45:07.037202Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.037301Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.038032Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.038417Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.041143Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T21:45:07.041945Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T21:45:07.103252Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.103328Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.104005Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.104459Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.107709Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T21:45:07.108551Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T21:45:07.137885Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.138812Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.139327Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.140273Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.143263Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T21:45:07.144253Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T21:45:07.172467Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.180420Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.180901Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.183502Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T21:45:07.212953Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.377450Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.377971Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.381344Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T21:45:07.410241Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.426120Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.426610Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.429240Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T21:45:07.458535Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.873695Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.874231Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.877415Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T21:45:07.906308Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.938366Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.938807Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.941579Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T21:45:07.971118Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.085319Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.085840Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.088520Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T21:45:08.117802Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.532950Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.533464Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.536331Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T21:45:08.565507Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.565841Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.565972Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.566226Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.567109Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.569532Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.571559Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:08.572452Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.600214Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.600276Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.600299Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.600509Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.600808Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.603161Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.603795Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.632756Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.632822Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.633000Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.635085Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:08.664770Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.287578Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:20.530932Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:20.530932Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] 
[2026-06-03T21:45:20.530932Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:20.531009Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] 
[2026-06-03T21:45:20.531016Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:20.531023Z] [nf-0dedd8c8659753ecdd2524025fc25952-11454-twxsn] [574_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec