[2026-06-03T21:45:08.495234Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:08.504784Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:08.504807Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:08.504816Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:08.504828Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXNrZa2a'
[2026-06-03T21:45:08.504835Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:08.504844Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:08.504852Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:08.504859Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] memMb: 773642
[2026-06-03T21:45:08.504866Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:08.504874Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:08.504881Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:08.504889Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:08.504898Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:08.505417Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:08.505514Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:08.515464Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:08.516210Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:08.516361Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:08.516561Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:08.516942Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.517680Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.517846Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.517982Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.518488Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.518918Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.519159Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.519565Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.520261Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.520778Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.520970Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.521291Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.523658Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.524342Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.524566Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:08.524623Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.524864Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.525000Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.525394Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.525851Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.526210Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.526345Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.526561Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.526691Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.526934Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.527235Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.527927Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.528062Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.528279Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.528407Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.528621Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.528849Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.529900Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.530135Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.530363Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.530492Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.530713Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.530839Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.531060Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.531203Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.531906Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.532473Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.532708Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.532837Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.533112Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.533245Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.533642Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.534514Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.534774Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.534918Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.535135Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.535307Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.535550Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.535913Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.536997Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.537902Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.538135Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.538291Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.538543Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.538671Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.539242Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.540072Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.540308Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.540478Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.540700Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.540834Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.541576Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.542330Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.543435Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.543686Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.544864Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.545011Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.545234Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.545362Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.548303Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.549192Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.549434Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.549573Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.549792Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.549920Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.550185Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.550399Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.551675Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.551808Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.552038Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.552170Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.552386Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.552665Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.553973Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.554112Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.554334Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.554462Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.554673Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.554819Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.555303Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.556540Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.556829Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.557014Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.582703Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.584166Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.584592Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.586161Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.586556Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.587015Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.587521Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.587718Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.588419Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.588690Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.589279Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.589631Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.590605Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.591059Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.591748Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.592308Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:08.592949Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.593178Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:08.593677Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.599841Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T21:45:08.603061Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T21:45:08.606336Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T21:45:08.610882Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T21:45:08.617991Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T21:45:08.618683Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T21:45:08.621730Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T21:45:08.722620Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T21:45:08.732816Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.732932Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.733008Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.735732Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.736247Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.736843Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.743013Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T21:45:08.744820Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:09.603504Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.606085Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.609544Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:10.271797Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.274497Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.277984Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T21:45:10.389109Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.391599Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.395040Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T21:45:10.506158Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.508637Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.511788Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T21:45:11.374564Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.377065Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.380550Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:11.541856Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.543434Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.546525Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T21:45:11.551250Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.553323Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.556458Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T21:45:11.585493Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.587636Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.591902Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T21:45:11.652946Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.654489Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.658962Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T21:45:11.671745Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.673257Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.677047Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T21:45:11.788045Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.790550Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.793815Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T21:45:11.855068Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.857651Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.861108Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T21:45:12.122525Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.125072Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.128854Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T21:45:12.189679Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.192186Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.195837Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T21:45:12.306973Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.309377Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.312950Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T21:45:12.373881Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.376428Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.380124Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T21:45:12.850348Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T21:45:12.891973Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.892103Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.894519Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.895140Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.898749Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:12.900492Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T21:45:12.959565Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.959685Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.962035Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.962673Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:12.967376Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T21:45:12.968402Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:13.027395Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.029789Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.033492Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T21:45:13.062454Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.064797Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.068583Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:13.097175Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.099465Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.103405Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:13.164216Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.166556Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.170025Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T21:45:13.230947Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.233279Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.236991Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T21:45:14.199671Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.201947Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.205751Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T21:45:14.266472Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.268651Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.272469Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T21:45:14.734307Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.736650Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.740466Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:14.801164Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.803432Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.807187Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T21:45:14.918178Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.920460Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.924067Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T21:45:14.985017Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.987246Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:14.991009Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T21:45:15.252425Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.254609Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.258157Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T21:45:15.319057Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.321238Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.324941Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T21:45:15.385851Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.388082Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.391536Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T21:45:15.420372Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.422504Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.425870Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T21:45:15.430752Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.432770Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.435949Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T21:45:15.547193Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.549344Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.552771Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T21:45:15.613740Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.613889Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.615932Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.616334Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.620657Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T21:45:15.621931Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T21:45:15.633236Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.635267Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.638424Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T21:45:15.699655Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.701704Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.704895Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T21:45:15.766112Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.768161Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.771577Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T21:45:15.832577Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.834116Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.837853Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T21:45:15.898769Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.900081Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.902521Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.903679Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T21:45:15.904145Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.907771Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T21:45:15.920409Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.921550Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.925113Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:15.985986Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.986103Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.987999Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.988361Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.988902Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.990814Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.994674Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:15.996439Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T21:45:15.997635Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T21:45:16.057130Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.057256Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.059022Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.059630Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.063764Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T21:45:16.064956Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T21:45:16.124481Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.125683Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.129797Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T21:45:16.190115Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.191463Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.195748Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T21:45:16.306611Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.308366Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.312203Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T21:45:16.372901Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.374492Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.378301Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T21:45:16.639578Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.641347Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.645527Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:16.906860Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.907958Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.911614Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T21:45:17.373666Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.375301Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.379089Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T21:45:17.439857Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.441599Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.445140Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T21:45:17.506068Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.507840Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.511609Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T21:45:17.622569Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.622707Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.624186Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.624737Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.629141Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T21:45:17.629488Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T21:45:17.991255Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.992914Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:17.996497Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T21:45:18.057389Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:18.059048Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:18.062531Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T21:45:18.123501Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:18.125159Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:18.128541Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T21:45:18.189491Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:18.191118Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:18.194439Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T21:45:19.207649Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.209195Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.213225Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T21:45:19.323994Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.324123Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.325710Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.326248Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.329614Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T21:45:19.330304Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T21:45:19.390706Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.390845Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.392315Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.392893Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.396663Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T21:45:19.397827Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T21:45:19.457568Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.459091Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.462568Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T21:45:19.523521Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.525067Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.528537Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:19.589466Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.590965Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.594748Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T21:45:19.655438Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.655576Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.656977Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.657507Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.661328Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T21:45:19.698973Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T21:45:19.722091Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.722210Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.723440Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.723974Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.728179Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T21:45:19.765174Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T21:45:19.790142Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.790265Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.791610Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.794869Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T21:45:19.855904Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.888636Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.889902Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.893266Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T21:45:19.954284Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.955644Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:19.958700Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T21:45:20.019784Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:20.385071Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:20.386298Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:20.389665Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T21:45:20.450553Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:20.815829Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:20.817039Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:20.820261Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T21:45:20.881289Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:21.096261Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:21.097463Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:21.100642Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T21:45:21.161736Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:24.182636Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:24.183826Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:24.186819Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T21:45:24.248116Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.774201Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.775599Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.778601Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T21:45:33.839776Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.840244Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.840441Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.840771Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.841227Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.846735Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:33.848008Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:33.849096Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:33.905832Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.905917Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.905959Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.906272Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.906582Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.909918Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:33.911023Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:33.970948Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.971035Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.971305Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:33.973899Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:34.035396Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:41.756440Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:56.624482Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:56.624482Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] 
[2026-06-03T21:45:56.624482Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:56.624563Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] 
[2026-06-03T21:45:56.624575Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:56.624586Z] [nf-916defc4e28fab9553abf9a83a770c3c-aceea-rqxpv] [801_1] [WorkflowRunner] Elapsed time for full workflow: 48 sec