File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/2df3ae3784fe97e083515d78300aac/output/Logs/Info.log
Size
3.3 KB
Attempt
2026-06-03T21:15:51Z thread 407 Sample sheet being processed by common lib? Yes
2026-06-03T21:15:51Z thread 407 SampleSheet Settings: 
2026-06-03T21:15:51Z thread 407   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T21:15:51Z thread 407 
2026-06-03T21:15:51Z thread 407 shared-thread-linux-native-asio output is disabled
2026-06-03T21:15:51Z thread 407 bcl-convert Version 4.4.6
2026-06-03T21:15:51Z thread 407 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T21:15:51Z thread 407 Command Line: --tiles s_5 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-03T21:15:51Z thread 407 Conversion Begins.
2026-06-03T21:15:51Z thread 407 Input BCL Information:
2026-06-03T21:15:51Z thread 407     Read Structure: 2026-06-03T21:15:51Z thread 407 Y1502026-06-03T21:15:51Z thread 407 ;2026-06-03T21:15:51Z thread 407 I82026-06-03T21:15:51Z thread 407 ;2026-06-03T21:15:51Z thread 407 I82026-06-03T21:15:51Z thread 407 ;2026-06-03T21:15:51Z thread 407 Y1502026-06-03T21:15:51Z thread 407 
2026-06-03T21:15:51Z thread 407     RunInfo.xml file lists: 8 lanes, 8 tiles
2026-06-03T21:15:51Z thread 407     BCL file format: bcl.gz
2026-06-03T21:15:51Z thread 407     Positions file format: locs
2026-06-03T21:15:51Z thread 407     Filter file format: filter
2026-06-03T21:15:51Z thread 407 Conversion Information:
2026-06-03T21:15:51Z thread 407     Tile filtering: converting 1/8 tiles
2026-06-03T21:15:51Z thread 407     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:51Z thread 407     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:51Z thread 407     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:51Z thread 407     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:51Z thread 407     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:51Z thread 407     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:51Z thread 407     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:15:51Z thread 407     Sample Count: 4
2026-06-03T21:15:51Z thread 407     Expected number of sample FASTQ files to be created: 8
2026-06-03T21:15:51Z thread 407 # CPU hw threads available: 64
2026-06-03T21:15:51Z thread 407 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T21:15:51Z thread 407 SW compressors: 64
2026-06-03T21:15:51Z thread 407 SW decompressors: 32
2026-06-03T21:15:51Z thread 407 SW FASTQ compression level: 1
2026-06-03T21:15:52Z thread 407 Lane 5 Post-run Information:
2026-06-03T21:15:52Z thread 407     Total clusters: 250000
2026-06-03T21:15:52Z thread 407     Total Genomic Reads: 500000
2026-06-03T21:15:52Z thread 407     Total Genomic Input Gigabases 0.08
2026-06-03T21:15:52Z thread 407     Minimum reads for a sample: 124610
2026-06-03T21:15:52Z thread 407     Maximum reads for a sample: 125588
2026-06-03T21:15:52Z thread 407     Average reads per sample: 125000.00
2026-06-03T21:15:52Z thread 407     Undetermined reads: 0
2026-06-03T21:15:52Z thread 407 Conversion Complete.