Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/84b552ba8175e0fa90865c45bde58c/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/4aeda57cf98fe66671e28d7e4dcb8c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/84b552ba8175e0fa90865c45bde58c/germline_control_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/4aeda57cf98fe66671e28d7e4dcb8c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/4f9bb8cea9fd3d5d282c86766b2c15/germline_control_1.forcecall.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/4f9bb8cea9fd3d5d282c86766b2c15/germline_control_1.forcecall.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.mkHAHq
Merging 1 temporary files
Done
Cleaning