Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4054179d8c2faede8275f03a3b1080/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ed3093e513c1d37d1ee29fa062c24a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/4cd5016cc07867ec769b0073310b1a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/4cd5016cc07867ec769b0073310b1a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8vm0d9n0 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:48:51,904 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:48:52,738 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:48:52,912 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:48:53,830 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:48:53,902 - cnv_pipe.batch.run_model - INFO - Processing cluster 715 with 185 probes
2026-06-03 21:48:54,389 - cnv_pipe.batch.run_model.cluster715 - INFO - Child process started for cluster 715 with 185 probes
2026-06-03 21:49:47,603 - cnv_pipe.batch.run_model.cluster715 - INFO - Child process finished cluster 715. Wrote cluster_715_samples.csv and cluster_715_params.csv
2026-06-03 21:49:47,604 - cnv_pipe.batch.run_model - INFO - Cluster 715 finished in 53.70 seconds. Status: SUCCESS