File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/d3c44aff067c658adee6a3c0be6a1e/.command.log
Size
63.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/bae461e32363e2c660756c20fc21b5/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/d3c44aff067c658adee6a3c0be6a1e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/bae461e32363e2c660756c20fc21b5/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/d3c44aff067c658adee6a3c0be6a1e/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXD6Yrgx/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXD6Yrgx/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXD6Yrgx/chr19_15162349-15162662.bed.gz.tbi
[2026-06-03T21:44:57.883432Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:44:57.923597Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:44:57.923629Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:44:57.923652Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:44:57.923661Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXD6Yrgx'
[2026-06-03T21:44:57.923672Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:44:57.923682Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:44:57.923693Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:44:57.923701Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] memMb: 70306
[2026-06-03T21:44:57.923714Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:44:57.923722Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:44:57.923732Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:44:57.923741Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:44:57.923751Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:44:57.924186Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:44:57.924255Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:44:57.933549Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:44:57.934106Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:44:57.934347Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:44:57.934550Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:44:57.934788Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.935249Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.935392Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.935517Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.935715Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.935832Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.936161Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.936543Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.936648Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.936991Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.937293Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.937934Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.938108Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.938432Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.940184Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.940718Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.941169Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:44:57.941371Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.941695Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.942171Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.942587Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.943071Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.943383Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.943843Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.944046Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.944158Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.944360Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.944473Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.944666Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.944785Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.945089Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.945787Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.946441Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.946570Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.946784Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.946910Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.947120Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.947257Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.947634Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.948267Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.948492Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.948623Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.948839Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.948963Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.950357Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.951258Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.951545Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.951764Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.951983Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.952108Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.952365Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.953221Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.953672Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.953871Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.954889Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.955008Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.955215Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.955338Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.955538Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.955658Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.956032Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.956823Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.957059Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.957192Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.957396Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.957519Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.984164Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.984434Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.984614Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.984975Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.985159Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.985391Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.985562Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.985807Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.985975Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.987866Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:44:58.153709Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.155392Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.155803Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.156290Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.157059Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.157638Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.158330Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.158911Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.159875Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.163710Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:44:58.166670Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:44:58.169371Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:44:58.171770Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:44:58.175858Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:44:58.177573Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:44:58.178036Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:44:58.178775Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:44:58.727321Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.729259Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.732565Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:44:58.993934Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.996405Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.002255Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:00.769037Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.771067Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.777229Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:45:01.035736Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.037574Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.044961Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:01.302741Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.303916Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.307288Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:01.468530Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.469713Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.473145Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:01.634362Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.635517Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.639074Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:01.850139Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.851213Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.854611Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:01.915478Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.916617Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.919937Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:02.080934Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.082325Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.085734Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:02.086215Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.087211Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.090294Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:02.119271Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.120383Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.123543Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:45:02.384972Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.385064Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.386074Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.386341Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.389816Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:02.390750Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:02.450717Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.452089Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.455648Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:02.666760Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.666883Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.668295Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.668667Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.672098Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:02.673272Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:02.883332Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.885712Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.886011Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.887224Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.892165Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:02.893257Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:03.203334Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.204862Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.208567Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:03.569775Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.571154Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.574234Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:03.735451Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.736924Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.741372Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:03.901917Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.903393Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.906723Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:04.569266Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.570772Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.574375Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:04.735480Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.736486Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.740043Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:04.901138Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.902893Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.907064Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:05.017414Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.018324Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.021878Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:05.383508Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.384955Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.388292Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:05.599626Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.601026Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.604572Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:06.266747Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.268175Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.271512Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:45:06.300220Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.301130Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.304314Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:06.515484Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.515585Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.516461Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.516838Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.521553Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:06.522534Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:06.731234Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.732312Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.735757Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:06.796840Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.798075Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.801148Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:06.862223Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.863813Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.867264Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:06.928657Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.930109Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.933682Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:07.094348Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.095204Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.099415Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:07.159448Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.160309Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.163556Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:07.324897Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.325738Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.328964Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:07.389751Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.390580Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.393675Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:07.555008Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.555801Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.558896Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:07.571867Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.572634Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.575939Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:07.636991Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.637764Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.641137Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:07.802061Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.802853Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.806077Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:07.834899Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.835670Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.838865Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:07.900064Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.900786Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.903952Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:07.964948Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.965051Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.965937Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.966467Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.967036Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.967959Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.971600Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:45:07.973705Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:07.975972Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:08.084158Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.084862Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.088198Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:08.088478Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.104341Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.104950Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.107932Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:08.219027Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.227011Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.842374Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.843016Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.846078Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:08.957210Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.422300Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.423108Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.426514Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:09.487415Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.203018Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.203640Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.206593Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:10.267884Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.832995Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.833678Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.836672Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:10.997894Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.317667Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.318307Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.321147Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:13.432401Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.432804Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.433010Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.433380Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.433771Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.438098Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:13.439637Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:13.440653Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:13.548317Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.548403Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.548440Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.548760Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.549139Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.552219Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:13.552935Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:13.663334Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.663413Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.663717Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.666673Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:13.727763Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:16.898107Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:31.010527Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:31.010527Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] 
[2026-06-03T21:45:31.010527Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:31.010587Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] 
[2026-06-03T21:45:31.010600Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:31.010611Z] [nf-f6d3c44aff067c658adee6a3c0be6a1e-01339-4tgkv] [793_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec