cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
No more license available for sentieon:TNhaplotyper
progress 5% @chr1:246000001, elapsed 0.0s, est remaining 0.9s, peak mem 418MB, user 0.0s, sys 2.3s, output queue size 92
progress 10% @chr2:134000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.2s, sys 7.3s, output queue size 250
progress 15% @chr3:1000001, elapsed 0.1s, est remaining 0.7s, peak mem 418MB, user 0.4s, sys 14.0s, output queue size 412
progress 20% @chr3:101000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 0.6s, sys 19.6s, output queue size 567
progress 25% @chr4:22000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 0.9s, sys 25.1s, output queue size 719
progress 30% @chr5:95000001, elapsed 0.2s, est remaining 0.5s, peak mem 418MB, user 1.1s, sys 29.9s, output queue size 880
progress 35% @chr6:83000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 1.5s, sys 35.5s, output queue size 967
progress 40% @chr7:110000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 1.8s, sys 40.9s, output queue size 357
progress 45% @chr8:51000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 2.1s, sys 46.4s, output queue size 519
progress 50% @chr10:82000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 2.2s, sys 50.1s, output queue size 681
progress 55% @chr10:129000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 2.6s, sys 54.7s, output queue size 842
progress 60% @chr12:62000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 3.0s, sys 59.8s, output queue size 1005
progress 65% @chr13:22000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 3.4s, sys 64.9s, output queue size 1166
progress 70% @chr14:94000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 3.7s, sys 70.3s, output queue size 1328
progress 75% @chr16:46000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 4.3s, sys 75.4s, output queue size 1490
progress 80% @chr16:59000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 4.7s, sys 80.5s, output queue size 1652
progress 85% @chr20:36000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 5.2s, sys 85.4s, output queue size 1814
progress 90% @chrX:64000001, elapsed 0.7s, est remaining 0.1s, peak mem 418MB, user 5.5s, sys 90.2s, output queue size 1976
progress 95% @chr22:33000001, elapsed 0.7s, est remaining 0.0s, peak mem 418MB, user 5.9s, sys 95.1s, output queue size 2216
progress 100% @HLA-DQA1*05:03:1, elapsed 0.8s, est remaining 0.0s, peak mem 418MB, user 6.2s, sys 105.6s, output queue size 5561
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.000 user 0.000 sys 0.010 real
"predict_filter": 136 calls 0.016 user 0.023 sys 0.079 real
advance: 3219322 calls 0.570 user 42.121 sys 50.381 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.003 sys 0.895 real
fetch_ref: 384 calls 0.003 user 0.085 sys 0.356 real
idle: 13563 calls 0.330 user 0.376 sys 276.937 real
init: 1 calls 0.263 user 0.056 sys 60.461 real
overall: 439095296 mem 8.303 user 110.145 sys 62.415 real