[2026-06-03T21:45:04.137802Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:04.138814Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:04.138847Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:04.138854Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:04.138859Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgsiMLp'
[2026-06-03T21:45:04.138869Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:04.138876Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:04.138880Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:04.138883Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:04.138895Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:04.138898Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:04.138903Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:04.138910Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:04.138914Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:04.139627Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:04.139733Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:04.145813Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:04.146638Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:04.146921Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:04.147137Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:04.147432Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.148118Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.148210Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.148283Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.148399Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.148468Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.149015Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.149140Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.149610Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.151852Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.152491Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.152838Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:04.153307Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.153531Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.153843Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154054Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154177Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154244Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154358Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154423Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154621Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154695Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154816Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.154885Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.155007Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.155084Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156049Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156258Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156374Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156444Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156554Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156712Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156875Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.156961Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.157085Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.157150Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158150Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158351Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158478Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158550Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158664Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158728Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158848Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.158914Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.159036Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.159098Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.159213Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.159334Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.159505Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.159688Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160236Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160311Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160422Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160485Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160601Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160664Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160774Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160844Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.160972Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.161043Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.161156Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.161241Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.161580Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.162206Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178114Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178279Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178362Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178546Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178634Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178758Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178846Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.178980Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.179070Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.179143Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:04.185361Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.186011Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.186306Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.186755Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.187364Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.188097Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.190847Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.191681Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.192438Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T21:45:04.193206Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.199076Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T21:45:04.201745Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T21:45:04.205010Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T21:45:04.208541Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T21:45:04.210533Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T21:45:04.211083Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T21:45:04.279303Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T21:45:04.309415Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.310447Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.315511Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T21:45:04.576647Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.577833Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.581499Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T21:45:04.642626Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.643517Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.646906Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T21:45:04.958891Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.959814Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.962688Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T21:45:05.024059Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.024938Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.028301Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T21:45:05.190251Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.191148Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.194743Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T21:45:05.255930Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.256911Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.259917Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T21:45:05.289203Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.290165Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.293029Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T21:45:05.293895Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.294677Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.297926Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T21:45:05.326844Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.327677Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.330723Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T21:45:05.331399Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.332019Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.335056Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T21:45:05.364095Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.365028Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.368374Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T21:45:05.397423Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.398274Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.399270Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.401679Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.403533Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T21:45:05.404656Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T21:45:05.516306Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.517255Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.520470Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T21:45:05.521149Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.521807Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.524738Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T21:45:05.686375Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.687669Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.688088Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.690782Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.692636Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T21:45:05.694139Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T21:45:05.755701Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.755825Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.756729Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.757126Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.760746Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T21:45:05.761801Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T21:45:05.822287Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.823151Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.826755Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T21:45:06.038127Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.039014Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.042295Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T21:45:06.153737Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.154637Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.157958Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:06.187187Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.187968Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.191233Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T21:45:06.220441Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.221254Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.225147Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T21:45:06.253439Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.254200Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.256142Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.257101Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T21:45:06.257225Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.260546Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T21:45:06.289345Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.290169Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.293461Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T21:45:06.298275Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.298936Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.302115Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T21:45:06.363381Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.363482Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.364211Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.364497Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.368069Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T21:45:06.369354Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T21:45:06.429039Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.429115Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.429708Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.430260Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.434229Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T21:45:06.435297Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T21:45:06.695874Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.696692Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.700093Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T21:45:06.761173Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.761909Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.765206Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T21:45:06.826441Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.826565Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.827281Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.827760Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.831235Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T21:45:06.832086Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T21:45:06.892299Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.892390Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.893001Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.893333Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.897375Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T21:45:06.898126Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T21:45:07.008434Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.009281Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.012502Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T21:45:07.073647Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.074666Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.078419Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:07.189332Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.189446Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.190135Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.190574Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.194379Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T21:45:07.195779Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:07.223126Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.224373Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.227631Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T21:45:07.232410Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.233523Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.236658Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T21:45:07.265675Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.266230Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.270096Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T21:45:07.270518Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.271154Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.274105Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T21:45:07.385530Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.386114Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.389313Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T21:45:07.450527Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.450604Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.451052Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.453996Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T21:45:07.515577Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.830869Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.831453Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.834511Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T21:45:07.847502Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.848075Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.850852Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T21:45:07.880148Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.896113Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.896196Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.896686Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.899693Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T21:45:07.961782Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.327042Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.327510Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.330412Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T21:45:08.359988Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.674856Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.675362Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.678197Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T21:45:08.707618Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.223169Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.223671Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.226827Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T21:45:09.256134Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.256452Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.256689Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.257246Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.257550Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.262781Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:09.264226Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:09.264745Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:09.323187Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.323261Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.323284Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.323549Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.323821Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.326804Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:09.327697Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:09.356324Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.364057Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.364308Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.367272Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:09.396474Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:09.812026Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:14.688356Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:14.688356Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] 
[2026-06-03T21:45:14.688356Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:14.688411Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] 
[2026-06-03T21:45:14.688416Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:14.688422Z] [nf-bd1fe79a88afd177bbb0767e5584aedf-da8ab-bfjpx] [579_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec