Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/fa77b7dec4d2ec207756a6883d28ce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/fa77b7dec4d2ec207756a6883d28ce/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/annotation-cache/vep_cache/113_GRCh38
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e000a0cfbc292e5b03719d7e5ee4d8/positive_somatic_control_2.snv_indel.phased.vcf.gz
==> STAGING COMPLETE (5 inputs)

ls: *.tab.gz: No such file or directory
ls: *.json.gz: No such file or directory