File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/f04de0c2476a8dffc3b1728367208d/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-03T21:45:03.142229Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:03.142820Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:03.142831Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:03.142836Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:03.142840Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXx5oKRY'
[2026-06-03T21:45:03.142844Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:03.142848Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:03.142852Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:03.142855Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:03.142859Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:03.142863Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:03.142868Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:03.142873Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:03.142877Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:03.143797Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:03.143915Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:03.149611Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:03.150428Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:03.150573Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:03.150793Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:03.151031Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.151411Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.151523Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.151598Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.151722Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.151789Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.151908Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.151973Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.152093Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.152259Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.152658Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.152778Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.152911Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.153116Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.153262Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.153862Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.154165Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.155443Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.155868Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.156147Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:03.156627Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.156701Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.156817Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.156885Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.156995Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.157057Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.157174Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.157237Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.157347Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.157418Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.157658Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.157961Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158083Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158151Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158260Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158325Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158437Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158500Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158607Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158667Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158781Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158842Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158951Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.159032Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.159956Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160249Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160364Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160483Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160597Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160661Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160769Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160835Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.160950Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.161013Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.161121Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.161181Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.161427Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.161844Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.161956Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162017Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162127Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162190Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162298Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162361Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162467Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162534Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162641Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.162700Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.178755Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.179170Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.179254Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.179418Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.179490Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.179578Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.180848Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.181571Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.181916Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.182424Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:03.182607Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:03.182723Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.183117Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.183841Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.184525Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.185319Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.187527Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.188756Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:03.189010Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.190355Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.193633Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T21:45:03.198612Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:03.200660Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:03.200992Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:03.205809Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T21:45:03.206128Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:03.208623Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T21:45:03.319989Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.320702Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.323828Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T21:45:03.735581Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.736439Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.739265Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T21:45:03.951116Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.951988Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.955117Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T21:45:04.567597Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.568312Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.571406Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:04.600315Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.600999Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.603851Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T21:45:04.665331Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.665987Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.668440Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:04.880320Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.880415Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.881096Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.881510Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.884288Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:04.885367Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T21:45:04.945970Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.946664Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.949623Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:04.962666Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.963332Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.966062Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T21:45:04.979124Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.979205Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.979829Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.980339Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.982919Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:04.983958Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T21:45:04.996435Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.997076Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.999549Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:05.004771Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.005419Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.008126Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:05.013165Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.013705Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.016095Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T21:45:05.029590Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.029662Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.030240Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.030713Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.033237Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T21:45:05.034587Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T21:45:05.038415Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.039033Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.041376Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T21:45:05.046588Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.047095Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.049701Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T21:45:05.062893Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.063760Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.064184Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.065129Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.067705Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:05.068672Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T21:45:05.068850Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.069358Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.071833Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T21:45:05.383827Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.384472Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.387045Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:05.416488Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.417145Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.419805Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:05.449132Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.449749Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.452493Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:05.513852Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.514458Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.517578Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:05.546816Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.547420Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.549874Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T21:45:05.761924Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762042Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762633Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.762898Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.766120Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T21:45:05.766707Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T21:45:05.795363Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.795962Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.798688Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T21:45:05.859925Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.860556Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.863843Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T21:45:05.892476Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.893051Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.895796Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T21:45:06.157760Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.157851Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.158370Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.158703Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.161408Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:06.162687Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T21:45:06.192076Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.192150Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.192185Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.192660Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.192932Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.193335Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.198234Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:06.198455Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:06.199403Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T21:45:06.257759Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.258313Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.261159Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:06.290343Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.290860Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.293844Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:06.354975Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.355056Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.355567Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.356024Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.358517Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:06.359454Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T21:45:06.388427Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.388502Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.389238Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.389599Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.390981Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.392157Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T21:45:06.392626Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.394817Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:06.395898Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T21:45:06.425491Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.425558Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.425963Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.426373Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.429064Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T21:45:06.429996Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T21:45:06.434179Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.434565Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.436899Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T21:45:06.466610Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.467550Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.467849Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.468641Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.471105Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T21:45:06.472360Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T21:45:06.933802Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.934353Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.937283Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T21:45:06.966460Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.966919Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.969823Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T21:45:07.131406Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.131940Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.134852Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T21:45:07.163803Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.478618Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.479100Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.482022Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T21:45:07.511209Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.575395Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.575834Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.579494Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:07.607688Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.771944Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.772007Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.772358Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.772645Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.775201Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T21:45:07.803693Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:07.804930Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.804995Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.805017Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.805386Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.807863Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T21:45:07.837378Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.402282Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.402635Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.405075Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T21:45:08.434405Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.748869Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.749216Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.751568Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T21:45:08.781081Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.781321Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.781482Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.781748Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.782226Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.785085Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.786431Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.787258Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:08.814541Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.814608Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.814628Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.814812Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.815138Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.817812Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.818684Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.847704Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.847774Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.847942Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.849890Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:08.879920Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.755978Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:22.031541Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:22.031541Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] 
[2026-06-03T21:45:22.031541Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:22.031597Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] 
[2026-06-03T21:45:22.031604Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:22.031611Z] [nf-c4f04de0c2476a8dffc3b1728367208d-82267-vjppz] [565_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec