File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/2401ab986fab590fe8c16e53147590/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXEuCJuu/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXEuCJuu/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXEuCJuu/chr19_15162349-15162662.bed.gz.tbi
[2026-06-03T21:45:01.268108Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:01.269079Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:01.269111Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:01.269116Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:01.269121Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXEuCJuu'
[2026-06-03T21:45:01.269127Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:01.269136Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:01.269140Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:01.269144Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:01.269149Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:01.269153Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:01.269157Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:01.269161Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:01.269166Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:01.269875Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:01.270001Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:01.276153Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:01.276919Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:01.277124Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:01.277451Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:01.277649Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.278305Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.278728Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.279107Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.279217Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.279581Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.279758Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.281542Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.281777Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:01.282131Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.282523Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.282738Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283112Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283187Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283300Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283369Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283481Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283547Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283657Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283720Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283904Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.283970Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.284339Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.284528Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.284756Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285029Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285148Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285213Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285322Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285389Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285519Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285620Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285730Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285794Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285924Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.285993Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.286156Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.286536Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.286656Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.286720Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.286832Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.286897Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.287011Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.287074Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.288244Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.288398Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.288671Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289248Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289390Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289458Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289572Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289639Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289750Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289813Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.289938Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.290003Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.290124Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.290190Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.290604Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.290989Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.291103Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.291163Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.291276Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.291341Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.291445Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.291513Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.307304Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.307807Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.308094Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.308773Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.308954Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.309414Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.309547Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.310234Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.312363Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.312892Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.313261Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.313557Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.314436Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.315434Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.316138Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.316657Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.317935Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:01.318260Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.320813Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.321366Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:01.324871Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:01.329427Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:01.333462Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:01.333737Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:45:01.336991Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:01.340034Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:45:01.340493Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:01.403896Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.404828Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.408722Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:45:01.920498Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.921545Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.924843Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:02.586893Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.587989Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.590858Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:45:02.802483Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.803571Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.806668Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:02.867662Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.867783Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.868765Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.869225Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.872053Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:45:02.898272Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:45:02.901291Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.902292Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.904905Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:02.905932Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.906842Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.909513Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:02.970824Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.971859Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.974924Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:03.186315Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.187120Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.190008Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:45:03.219409Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.220149Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.223093Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:03.236130Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.236820Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.239855Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:03.268726Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.269413Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.272251Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:03.273198Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.273831Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.276990Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:03.338212Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.338969Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.341708Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:03.371184Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.371882Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.375143Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:03.403948Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.404630Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.407627Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:03.436816Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.437773Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.440535Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:03.602073Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.602180Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.603056Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.603393Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.607112Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:03.607744Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:04.320154Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.320256Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.320920Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.321275Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.324717Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:04.356434Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:04.385935Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.386634Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.389926Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:45:04.418958Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.419659Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.422903Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:04.423509Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.424099Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.426488Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:04.455918Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.456568Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.459640Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:04.520744Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.521491Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.524679Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:04.553574Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.554257Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.557085Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:04.669118Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.669972Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.673171Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:04.702630Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.703357Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.706273Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:04.735418Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.735517Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.736108Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.736472Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.739307Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:04.740169Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:04.768605Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.768699Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.769267Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.769954Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.772684Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:04.774051Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:04.803043Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.803664Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.806818Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:05.369231Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.369855Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.373021Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:05.434298Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.434926Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.437954Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:05.499108Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.499785Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.502571Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:05.563905Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.564577Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.567604Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:05.628905Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.629561Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.632455Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:05.661784Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.662411Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.665139Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:05.694382Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.694918Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.698069Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:05.758910Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.759009Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.759537Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.760318Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.763288Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:05.764251Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:05.793941Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.794529Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.797370Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:05.826450Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.826965Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.829978Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:05.834720Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.835180Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.837887Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:05.867263Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.867797Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.870019Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.870582Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.871908Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:05.872968Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:05.902719Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.934823Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.935322Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.938150Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:05.967233Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.967298Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.967329Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.967740Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.968048Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.970784Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:05.971337Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:05.999997Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.015626Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.015949Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.018313Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:06.080092Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.144152Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.144633Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.147565Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:06.177106Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.792387Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.793089Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.796043Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:06.824959Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.888997Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.889504Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.891898Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:06.953355Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.167573Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.168080Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.170687Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:07.199926Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.200245Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.200403Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.200702Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.200920Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.204987Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:07.206704Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:07.207693Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:07.233320Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.233411Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.233441Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.233683Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.234034Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.236587Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:07.261091Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:07.266509Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.266580Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.266802Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.269320Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:07.298607Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:11.872981Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:20.157840Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:20.157840Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] 
[2026-06-03T21:45:20.157840Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:20.157936Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] 
[2026-06-03T21:45:20.157948Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:20.157956Z] [nf-e62401ab986fab590fe8c16e53147590-7d880-t89zv] [717_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec