File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/238f1ae47563581fc5470715dd4672/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-03T21:45:04.742394Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:04.743266Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:04.743276Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:04.743281Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:04.743285Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqSxxni'
[2026-06-03T21:45:04.743289Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:04.743294Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:04.743297Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:04.743301Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:04.743304Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:04.743308Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:04.743311Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:04.743315Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:04.743319Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:04.744008Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:04.744123Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:04.749895Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:04.750729Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:04.750944Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:04.751217Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:04.751476Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.752109Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.752205Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.752276Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.752397Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.752464Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.752694Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.753029Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.753173Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.753367Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.753448Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.753784Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.754033Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.754612Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.754877Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.756701Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:04.757061Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.757240Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.757408Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.757481Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.757705Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.757777Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.757893Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.757963Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.758074Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.758135Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.758866Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759032Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759143Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759239Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759361Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759429Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759589Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759655Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759767Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759832Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.759944Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.760007Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.760368Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.760639Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.760750Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.760811Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.760925Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.760989Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.761095Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.761158Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.761272Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.761386Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.761501Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.761568Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.761755Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762137Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762248Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762313Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762425Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762487Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762596Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762660Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762766Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762829Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.762940Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.763001Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.763112Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.763232Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778098Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778349Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778419Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778579Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778652Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778736Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778803Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778911Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.778977Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:04.779025Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:04.781290Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.781937Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.784647Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.785273Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T21:45:04.785562Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.786004Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.787648Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.788258Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T21:45:04.790326Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.790946Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:04.791194Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.793278Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.793637Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T21:45:04.796868Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T21:45:04.800339Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T21:45:04.802157Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T21:45:04.803242Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T21:45:04.859335Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.859404Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.860183Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.860625Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.860953Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.865059Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:04.865722Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.870495Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T21:45:04.872476Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T21:45:04.932771Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.932851Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.933545Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.934300Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.937453Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T21:45:04.938504Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T21:45:05.249660Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.250461Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.253638Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T21:45:05.282991Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.283789Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.286651Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T21:45:05.448611Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.448714Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.449468Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.449976Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.452960Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T21:45:05.454214Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T21:45:05.483883Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.483976Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.484647Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.484874Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.487751Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T21:45:05.488852Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T21:45:05.517041Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.517755Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.520425Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T21:45:05.549622Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.550350Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.552983Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T21:45:05.582450Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.583180Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.585941Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T21:45:05.697390Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.698196Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.701069Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T21:45:05.730393Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.730500Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.731125Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.731847Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.735220Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:05.735838Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T21:45:05.748177Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.748764Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.751128Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T21:45:05.780804Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.780886Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.781781Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.782185Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.782694Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.785527Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.786924Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T21:45:05.788238Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T21:45:05.790598Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T21:45:05.850217Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.850867Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.853511Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T21:45:05.882747Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.883436Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.886116Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T21:45:05.915349Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.916012Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.918707Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T21:45:05.980004Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.980722Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.983859Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T21:45:06.045134Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.045808Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.048893Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T21:45:06.061979Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.062631Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.065144Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T21:45:06.094497Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.095143Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.098139Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T21:45:06.103177Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.103730Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.106286Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T21:45:06.135720Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.136343Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.138918Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T21:45:06.168408Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.168497Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.169041Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.169329Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.172064Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T21:45:06.173327Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T21:45:06.201315Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.201860Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.204359Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T21:45:06.217749Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.218321Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.221047Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T21:45:06.221944Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.222382Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.224703Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T21:45:06.254253Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.254339Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.254852Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.255150Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.258127Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T21:45:06.259084Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T21:45:06.319295Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.319884Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.323082Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T21:45:06.384464Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.385096Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.387863Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T21:45:06.449284Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.449892Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.453030Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T21:45:06.482336Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.482904Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.485571Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T21:45:06.514916Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.515501Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.518587Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T21:45:06.579688Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.580279Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.583042Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T21:45:06.612320Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.612827Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.615534Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T21:45:06.977993Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.978591Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.981697Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T21:45:07.011013Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.011162Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.011654Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.011923Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.014659Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T21:45:07.015717Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T21:45:07.044013Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.044728Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.044963Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.046638Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.047997Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T21:45:07.049008Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T21:45:07.078795Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.078873Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.243366Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.243442Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.243882Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.244176Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.246841Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T21:45:07.248141Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T21:45:07.309871Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.309964Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.309988Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.310416Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.313199Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T21:45:07.342588Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.506916Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.507334Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.509949Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T21:45:07.539318Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.603521Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.603918Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.606356Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T21:45:07.636001Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.950644Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.951071Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.953408Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T21:45:07.983193Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.983442Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.983563Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.984187Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.985686Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.986123Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:07.988522Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:07.989613Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.017964Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.018027Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.018050Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.018242Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.018617Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.021094Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.021769Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.050401Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.050469Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.050649Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.052800Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:08.082680Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:10.402232Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:15.279334Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:15.279334Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] 
[2026-06-03T21:45:15.279334Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:15.279390Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] 
[2026-06-03T21:45:15.279398Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:15.279404Z] [nf-d0238f1ae47563581fc5470715dd4672-94f21-mtsq4] [590_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec