File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/59e3b8b2533c8f32139f848ea4f89b/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4sw2qT/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4sw2qT/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4sw2qT/chr19_15162349-15162662.bed.gz.tbi
[2026-06-03T21:45:01.097988Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:01.099429Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:01.099440Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:01.099444Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:01.099448Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX4sw2qT'
[2026-06-03T21:45:01.099452Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:01.099457Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:01.099460Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:01.099464Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T21:45:01.099468Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:01.099471Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:01.099475Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:01.099478Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:01.099482Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:01.100049Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:01.100174Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:01.105877Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:01.106612Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:01.106792Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:01.107001Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:01.107269Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.107673Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.107774Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.107846Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.107963Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.108029Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.108146Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.108210Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.108480Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.108729Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.108864Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.108990Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.109056Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.109576Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.109904Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.110158Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.111777Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.112160Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:01.112548Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.112745Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113123Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113195Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113310Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113435Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113558Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113626Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113748Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113813Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113925Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.113994Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.114119Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.114373Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.114704Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.114784Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.114905Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.114973Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.115115Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.115181Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.115297Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.115373Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.115484Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.115549Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.115824Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.116073Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.117004Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.117563Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.117911Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118046Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118163Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118229Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118339Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118404Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118515Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118583Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118699Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.118774Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.119190Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.119497Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.119608Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.119678Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.119788Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.119849Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.119960Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.120023Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.120129Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.120196Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.134570Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.134908Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.135035Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.135383Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.135838Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.136076Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.136839Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.136988Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.137209Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.138818Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:01.138946Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.139071Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:01.139444Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.140028Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.140966Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.141428Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.142978Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.144061Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.145139Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.150258Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:01.155110Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:01.155759Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:45:01.157504Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:45:01.158030Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:45:01.162092Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:01.162667Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:01.236174Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:01.276740Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.277447Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.281711Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:01.341396Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.342093Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.344825Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:01.857342Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.858157Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.861476Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T21:45:01.922566Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.923386Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.926542Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:45:02.288528Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.289293Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.292572Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:02.353998Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.354774Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.357812Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:02.370677Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.371379Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.374244Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:02.403217Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.403857Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.406618Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:02.467991Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.468650Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.471517Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T21:45:02.484573Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.485201Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.487947Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T21:45:02.500927Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.501560Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.504193Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:02.517427Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.518033Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.520659Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:02.582038Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.582662Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.585012Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T21:45:02.646613Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.647302Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.650027Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:02.679349Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.679968Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.682132Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T21:45:02.711748Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.712340Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.714654Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:02.744252Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.744813Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.747257Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:03.059672Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.060364Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.062661Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T21:45:03.092296Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.092870Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.095454Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T21:45:03.124651Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.124713Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.125247Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.125595Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.128339Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T21:45:03.129451Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:03.157879Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.158435Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.161146Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:03.190597Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.191156Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.193548Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T21:45:03.198937Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.199485Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.201852Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T21:45:03.207136Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.207680Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.210224Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T21:45:03.223527Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.224049Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.226455Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:03.231784Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.232306Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.234910Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T21:45:03.240365Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.240891Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.243650Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:03.272697Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.273212Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.275781Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:03.838455Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.838540Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.839147Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.839578Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.842552Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:03.869954Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T21:45:03.872259Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.872326Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.872778Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.873200Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.876205Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:03.876827Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:03.877070Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.877518Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.879764Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T21:45:03.909443Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.909961Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.912607Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:04.174392Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.175002Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.177998Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T21:45:04.207149Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.207222Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.207685Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.208059Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.211262Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:04.211848Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:04.422812Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.423370Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.425987Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T21:45:04.455232Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.455738Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.458363Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:04.820273Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.820759Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.823380Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:04.852557Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.852624Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.853057Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.853315Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.856014Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T21:45:04.857336Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T21:45:04.885228Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.885290Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.885312Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.885328Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.885742Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.886145Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.886348Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.888284Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.888969Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T21:45:04.891311Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T21:45:04.892789Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T21:45:04.893639Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:04.921209Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.921272Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.921294Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.921682Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.923233Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.923619Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.924192Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:04.926476Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T21:45:04.927379Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:04.955656Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.971510Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.971886Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.974668Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T21:45:05.035939Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.099906Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.100256Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.102712Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T21:45:05.132118Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.396370Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.396743Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.399461Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T21:45:05.428484Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.592594Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.592964Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.595378Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T21:45:05.600512Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.600824Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.603032Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:05.632602Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.632668Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.897233Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.897584Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.900012Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T21:45:05.929454Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.494477Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.494860Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.497462Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:06.527136Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.527357Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.527474Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.527755Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.528063Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.531291Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:06.532956Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:06.533202Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:06.560704Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.560769Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.560791Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.560969Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.561407Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.563891Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:06.588069Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:06.593589Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.593650Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.593816Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.596145Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:06.625873Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.790010Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:11.665388Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:11.665388Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] 
[2026-06-03T21:45:11.665388Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:11.665436Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] 
[2026-06-03T21:45:11.665442Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:11.665449Z] [nf-a959e3b8b2533c8f32139f848ea4f89b-1d8c1-82vbp] [572_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec