Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/858abdb5b5e1c5786d5dbc087f1b34/positive_somatic_control_1.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/fe5923e7f54c608f0fd5c08d5f3ca8/positive_somatic_control_1.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/858abdb5b5e1c5786d5dbc087f1b34/positive_somatic_control_1.snv_indel.strelka.indel.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/2eea2a036f95dd5f7b56bfca8f7583/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/2eea2a036f95dd5f7b56bfca8f7583/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/fe5923e7f54c608f0fd5c08d5f3ca8/positive_somatic_control_1.snv_indel.tnseq.snv.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
[W::hts_idx_load3] The index file is older than the data file: positive_somatic_control_1.snv_indel.tnseq.snv.vcf.gz.tbi
ls: positive_somatic_control_1.snv_indel.merged.vcf.gz.csi: No such file or directory