File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/e0fba0dae2e5b9ac7c28f86e41c036/.command.err
Size
53.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr16_25246607-25247490.bed)
Attempt

Content

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[2026-06-03T21:44:56.932949Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:44:56.935193Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:44:56.935215Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:44:56.935224Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:44:56.935233Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXnj2kEK'
[2026-06-03T21:44:56.935241Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:44:56.935251Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:44:56.935259Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:44:56.935268Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] memMb: 382687
[2026-06-03T21:44:56.935276Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:44:56.935284Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:44:56.935299Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:44:56.935308Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:44:56.935318Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:44:56.935872Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:44:56.936077Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:44:56.946080Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:44:56.946822Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:44:56.946918Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:44:56.947129Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:44:56.947364Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.948833Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.949097Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.949473Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.949575Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.949939Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.950341Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.950863Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.951113Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.953123Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.953810Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.954121Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:44:56.954509Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.954731Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.955295Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.955713Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.956060Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.956416Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.956928Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.957519Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.957778Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.957917Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.958131Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.958271Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.958497Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.958732Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.959432Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.959563Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.959780Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.959908Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.960170Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.960314Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.960657Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.961363Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.962248Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.962457Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.963340Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.963549Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.964421Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.964646Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.965441Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.965575Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.965829Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.965996Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.966233Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.966381Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.966828Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.967752Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.968195Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.969119Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.970211Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.970346Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.970575Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.970707Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.970935Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.971055Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.994846Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.995220Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.995383Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.995968Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.996947Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.997080Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.997369Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.997624Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.997986Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.998325Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.998518Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.999189Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.999364Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.999579Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:44:57.000130Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:44:57.000380Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.002513Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.003369Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.004188Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.010950Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-03T21:44:57.011859Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-03T21:44:57.015882Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:44:57.016724Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-03T21:44:57.021051Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-03T21:44:57.023786Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-03T21:44:57.024135Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-03T21:44:57.026997Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:44:57.122261Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.122360Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.123342Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.123733Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.129000Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:44:57.130535Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-03T21:44:58.792046Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.793095Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.796922Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-03T21:44:58.825572Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.826681Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.830305Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-03T21:44:58.941150Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.942227Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.945935Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-03T21:44:59.056808Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.057894Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.061401Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T21:44:59.172353Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.173439Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.176759Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-03T21:44:59.438622Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.440154Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.443694Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-03T21:44:59.905366Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.907122Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.910789Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-03T21:45:00.773680Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.774715Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.777924Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-03T21:45:00.838742Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.839777Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.843252Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-03T21:45:01.605810Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.606852Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.609956Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-03T21:45:01.670957Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.671988Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.675310Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-03T21:45:01.836683Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.836793Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.837760Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.838045Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.841259Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-03T21:45:01.842418Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-03T21:45:01.902297Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.903980Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.907455Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-03T21:45:01.968274Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.969690Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.973130Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-03T21:45:02.184409Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.185972Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.189259Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-03T21:45:02.300365Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.301794Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.305105Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-03T21:45:02.366073Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.367520Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.371179Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-03T21:45:02.832986Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.834368Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.837850Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T21:45:02.898594Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.899983Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.903524Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-03T21:45:02.916077Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.917378Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.920494Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-03T21:45:02.949477Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.950887Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.953822Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T21:45:02.966828Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.968111Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.971515Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:03.000396Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.001716Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.004868Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-03T21:45:03.066021Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.067350Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.070421Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T21:45:03.131439Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.131586Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.133059Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.133463Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.137007Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-03T21:45:03.138582Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:03.197934Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.199179Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.202551Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-03T21:45:03.231425Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.232690Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.235702Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T21:45:03.296729Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.297565Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.300552Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-03T21:45:03.361664Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.362916Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.366195Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T21:45:03.427175Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.428367Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.431758Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-03T21:45:03.492677Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.493925Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.497363Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T21:45:03.608302Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.609120Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.612806Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T21:45:03.625415Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.626210Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.629308Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-03T21:45:03.690297Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.690430Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.691510Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.691965Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.695601Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-03T21:45:03.696870Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-03T21:45:03.756388Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.757539Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.760850Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-03T21:45:03.821818Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.986578Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.987301Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.990759Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-03T21:45:04.051953Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.116313Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.116980Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.120203Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-03T21:45:04.181363Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.897081Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.897785Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.901018Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-03T21:45:04.962098Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.076384Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.077041Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.080297Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-03T21:45:05.141378Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.260440Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.261060Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.264212Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-03T21:45:07.325496Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.540351Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.540995Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.544087Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-03T21:45:07.605105Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.869963Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.870598Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.873563Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-03T21:45:07.934608Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.934980Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.935190Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.935474Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.935785Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.940878Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:07.941200Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:07.941953Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:08.000381Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.000470Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.000510Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.000820Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.001108Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.004366Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.005395Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.065487Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.065602Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.065952Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.068827Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:08.129912Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:15.951096Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:30.054481Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:30.054481Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] 
[2026-06-03T21:45:30.054481Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:30.054552Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] 
[2026-06-03T21:45:30.054567Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:30.054581Z] [nf-6fe0fba0dae2e5b9ac7c28f86e41c036-ecaed-r9slq] [771_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec