cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18376800, elapsed 0.0s, est remaining 0.9s, peak mem 84MB, user 0.0s, sys 0.1s, output queue size 2369
progress 10% @chr1:37752876, elapsed 0.1s, est remaining 0.8s, peak mem 91MB, user 0.1s, sys 0.3s, output queue size 2953
progress 15% @chr1:65405870, elapsed 0.1s, est remaining 0.8s, peak mem 103MB, user 0.1s, sys 0.5s, output queue size 5675
progress 20% @chr1:113837590, elapsed 0.2s, est remaining 0.9s, peak mem 111MB, user 0.1s, sys 0.7s, output queue size 8434
progress 25% @chr1:155241086, elapsed 0.3s, est remaining 0.9s, peak mem 121MB, user 0.2s, sys 0.8s, output queue size 10779
progress 30% @chr1:179102287, elapsed 0.4s, est remaining 0.9s, peak mem 126MB, user 0.2s, sys 1.0s, output queue size 13252
progress 35% @chr1:209801240, elapsed 0.5s, est remaining 0.9s, peak mem 139MB, user 0.3s, sys 1.1s, output queue size 15681
progress 40% @chr1:246986967, elapsed 0.6s, est remaining 0.9s, peak mem 144MB, user 0.3s, sys 1.3s, output queue size 18088
progress 45% @chr2:32575156, elapsed 0.6s, est remaining 0.8s, peak mem 157MB, user 0.3s, sys 1.5s, output queue size 20376
progress 50% @chr2:74460221, elapsed 0.7s, est remaining 0.7s, peak mem 166MB, user 0.3s, sys 1.7s, output queue size 1125
progress 55% @chr2:113499257, elapsed 0.7s, est remaining 0.6s, peak mem 174MB, user 0.4s, sys 1.8s, output queue size 3655
progress 60% @chr2:170996653, elapsed 0.8s, est remaining 0.5s, peak mem 184MB, user 0.4s, sys 1.9s, output queue size 6350
progress 65% @chr2:202788830, elapsed 0.9s, est remaining 0.5s, peak mem 196MB, user 0.5s, sys 2.1s, output queue size 8625
progress 70% @chr2:233772261, elapsed 0.9s, est remaining 0.4s, peak mem 205MB, user 0.5s, sys 2.2s, output queue size 11102
progress 75% @chr3:25623515, elapsed 1.0s, est remaining 0.3s, peak mem 211MB, user 0.6s, sys 2.3s, output queue size 13325
progress 80% @chr3:49808020, elapsed 1.1s, est remaining 0.3s, peak mem 222MB, user 0.6s, sys 2.5s, output queue size 15800
progress 85% @chr3:101859272, elapsed 1.1s, est remaining 0.2s, peak mem 228MB, user 0.7s, sys 2.6s, output queue size 18436
progress 90% @chr3:140562811, elapsed 1.2s, est remaining 0.1s, peak mem 241MB, user 0.7s, sys 2.7s, output queue size 21048
progress 95% @chr3:188239635, elapsed 1.3s, est remaining 0.1s, peak mem 247MB, user 0.8s, sys 2.9s, output queue size 23442
progress 100% @chr4:25863456, elapsed 1.3s, est remaining 0.0s, peak mem 255MB, user 0.8s, sys 3.0s, output queue size 25677
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586807
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.002 sys 0.018 real
advance: 51084 calls 0.003 user 0.010 sys 0.023 real
calc: 100735 calls 0.000 user 0.000 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.006 user 0.000 sys 2.253 real
fetch: 100735 calls 0.000 user 0.003 sys 0.019 real
fetch_ref: 100735 calls 0.031 user 0.016 sys 0.359 real
idle: 39 calls 0.003 user 0.005 sys 23.689 real
init: 1 calls 0.050 user 0.000 sys 0.042 real
region: 100735 calls 0.000 user 0.000 sys 0.022 real
tracker: 100735 calls 0.016 user 0.002 sys 0.094 real
overall: 267653120 mem 1.152 user 4.264 sys 3.372 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory