File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/7110ac5517c47ac25c35b2090f16e9/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/bae461e32363e2c660756c20fc21b5/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/7110ac5517c47ac25c35b2090f16e9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/bae461e32363e2c660756c20fc21b5/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/7110ac5517c47ac25c35b2090f16e9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T21:44:56.575614Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:44:56.576286Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:44:56.576302Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:44:56.576309Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:44:56.576315Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXLSMoWU'
[2026-06-03T21:44:56.576321Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:44:56.576333Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:44:56.576339Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:44:56.576344Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] memMb: 507674
[2026-06-03T21:44:56.576349Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:44:56.576359Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:44:56.576364Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:44:56.576372Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:44:56.576378Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:44:56.576999Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:44:56.577106Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:44:56.585025Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:44:56.585940Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:44:56.586058Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:44:56.586283Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:44:56.586452Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.587309Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.587651Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.587747Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.587883Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.588100Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.588250Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.588637Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.588785Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.589069Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.589193Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.589546Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.589735Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.591561Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.591716Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:44:56.592042Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.592212Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.592302Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.592454Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.592571Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.592807Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.592896Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.593221Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.593530Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.593684Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.593769Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.594360Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.594452Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.594669Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595070Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595223Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595352Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595513Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595601Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595749Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595837Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.595984Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.596079Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.596455Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.596882Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597065Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597151Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597317Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597410Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597557Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597643Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597798Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.597923Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.598388Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.598894Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599053Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599145Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599297Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599383Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599534Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599626Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599776Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.599876Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.600258Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.600804Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.600976Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.601066Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.601215Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.601308Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.620041Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.620948Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.620983Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.621174Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.622062Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.622170Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.622320Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.622457Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.622737Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.622908Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.623148Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.624971Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.625426Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:44:56.625581Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.625721Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:44:56.626140Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.626660Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.627520Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.630293Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.630624Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T21:44:56.633343Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T21:44:56.637654Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T21:44:56.639894Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T21:44:56.640376Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T21:44:56.643349Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T21:44:56.645039Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T21:44:56.646531Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T21:44:56.754678Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.754769Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.754808Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.754839Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.755691Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.755929Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.756641Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.759619Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T21:44:56.760576Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.760930Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T21:44:56.762928Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T21:44:56.765269Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T21:44:56.824918Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.825834Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.829647Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T21:44:56.892424Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.893482Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:44:56.896665Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T21:44:57.258488Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.259997Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.263092Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T21:44:57.374642Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.375544Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.378751Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T21:44:57.540843Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.541758Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:44:57.545443Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T21:44:58.258695Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.260085Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.263635Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T21:44:58.324683Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.324830Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.326254Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.326588Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.330157Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T21:44:58.331565Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T21:44:58.392552Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.393438Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:58.396355Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T21:44:59.110899Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.112214Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.115515Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T21:44:59.276775Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.276932Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.278595Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.279149Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.282619Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T21:44:59.283351Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T21:44:59.343484Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.343592Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.343634Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.344843Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.345302Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.345795Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.350594Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T21:44:59.351962Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T21:44:59.352668Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T21:44:59.356008Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.357265Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.360605Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T21:44:59.421669Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.422443Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.425359Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T21:44:59.537040Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.537829Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.540722Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T21:44:59.603446Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.604243Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.607347Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T21:44:59.668676Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.669454Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.673044Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T21:44:59.734571Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.735338Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.738046Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T21:44:59.900081Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.900895Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.903958Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T21:44:59.966917Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.967657Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:44:59.971456Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:00.082655Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.083418Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.086534Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:00.148526Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.149267Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.152920Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T21:45:00.181894Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.182620Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.185640Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T21:45:00.191537Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.192221Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.195376Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T21:45:00.201403Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.202077Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.205076Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T21:45:00.234258Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.234333Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.235001Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.235481Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.240254Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T21:45:00.240669Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T21:45:00.244303Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.245467Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.248654Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T21:45:00.310032Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.311057Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.314407Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T21:45:00.375267Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.376503Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.380346Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T21:45:00.441232Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.441334Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.442366Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.442770Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.446343Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T21:45:00.447558Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T21:45:00.507821Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.508847Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.512082Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T21:45:00.572982Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.574021Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.577336Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T21:45:00.638592Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.639588Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.643126Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T21:45:00.703875Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.703978Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.704544Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.706451Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.707893Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T21:45:00.709219Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T21:45:00.771669Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.771773Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.772322Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.773092Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.775941Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T21:45:00.811101Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T21:45:00.837249Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.837840Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.841119Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T21:45:00.847362Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.847922Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.850672Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T21:45:00.879864Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.880885Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.883681Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T21:45:00.888670Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.920743Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.920831Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.921604Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.924441Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T21:45:00.985569Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.985654Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.986154Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:00.989522Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T21:45:01.050753Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.416863Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.417388Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:01.420444Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T21:45:01.482394Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.048024Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.048515Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.051521Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T21:45:02.113314Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.129510Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.129966Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.132915Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T21:45:02.194973Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.911456Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.911941Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.914688Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T21:45:02.976472Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.976814Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.976990Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.977609Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.978333Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.981530Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:02.982729Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:02.983629Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:03.012515Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.012579Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.012615Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.012844Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.014506Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.015762Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:03.016621Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:03.046500Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.046563Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.046795Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.049042Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:03.079782Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.201856Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:15.464965Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:15.464965Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] 
[2026-06-03T21:45:15.464965Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:15.465023Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] 
[2026-06-03T21:45:15.465032Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:15.465040Z] [nf-f37110ac5517c47ac25c35b2090f16e9-5e126-zlrkx] [573_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec