Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/de08b03424db97504bc4a9aca6085b/negative_somatic_control_1.snv_indel.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/adab020e95d07a954ad139e0b07ab0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/adab020e95d07a954ad139e0b07ab0/.command.run
==> STAGING COMPLETE (3 inputs)

Checking the headers and starting positions of 1 files
ls: negative_somatic_control_1.snv_indel.phased.vcf.gz.csi: No such file or directory