Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/e6522ac977542bb276e925fe7793ed/.command.sh Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/8ee7221cb00667c7914a883215e2de/HCC1395_BL.recalibrated.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/8ee7221cb00667c7914a883215e2de/HCC1395_BL.recalibrated.bam.bai Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/e6522ac977542bb276e925fe7793ed/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz.tbi ==> STAGING COMPLETE (10 inputs) Successfully created workflow run script. To execute the workflow, run the following script and set appropriate options: /var/tmp/strelka/runWorkflow.py [2026-06-03T21:45:02.497749Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Initiating pyFlow run [2026-06-03T21:45:02.507170Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow [2026-06-03T21:45:02.507207Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] pyFlowVersion: 1.1.20 [2026-06-03T21:45:02.507212Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0 [2026-06-03T21:45:02.507217Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9d5Fid' [2026-06-03T21:45:02.507221Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8' [2026-06-03T21:45:02.507227Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] mode: local [2026-06-03T21:45:02.507231Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] nCores: 8 [2026-06-03T21:45:02.507242Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] memMb: 1523736 [2026-06-03T21:45:02.507246Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data [2026-06-03T21:45:02.507250Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] isDryRun: False [2026-06-03T21:45:02.507257Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] isContinue: False [2026-06-03T21:45:02.507261Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] isForceContinue: True [2026-06-03T21:45:02.507269Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [RunParameters] mailTo: '' [2026-06-03T21:45:02.507811Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow [2026-06-03T21:45:02.507943Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10 [2026-06-03T21:45:02.513815Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow [2026-06-03T21:45:02.514587Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow [2026-06-03T21:45:02.514854Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow [2026-06-03T21:45:02.515356Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow [2026-06-03T21:45:02.515651Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.516440Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.516538Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.516834Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.517338Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.517473Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.517580Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.518301Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.518503Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.520372Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.520854Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521041Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node [2026-06-03T21:45:02.521361Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521437Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521556Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521624Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521736Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521801Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521917Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.521983Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.522307Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.522538Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.522657Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.522723Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.522835Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.522896Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.523022Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.523087Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.523196Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.523263Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.523408Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.523502Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.523718Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524073Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524188Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524250Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524358Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524423Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524533Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524595Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524714Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524777Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524886Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.524973Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.525091Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.525505Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.525625Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.525690Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.525861Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.525930Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.526036Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.526108Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.526220Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.526280Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.526389Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.526451Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.526671Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527127Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527239Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527305Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527415Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527477Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527589Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527653Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527763Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527832Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.527943Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.528004Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.528112Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.528245Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.528777Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.528844Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.528968Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.529036Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.530725Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531275Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531409Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531481Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531599Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531666Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531782Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531848Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.531965Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.532033Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.532143Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.532212Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.532477Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533077Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533193Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533260Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533377Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533446Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533558Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533622Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533834Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.533901Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.534018Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.534085Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.549871Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:02.551569Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.552568Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.552755Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.552964Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.553529Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.553836Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.554456Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.554713Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.555233Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.555629Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.556130Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.556990Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.557295Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.558632Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.559504Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.560756Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.560952Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome' [2026-06-03T21:45:02.562206Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow [2026-06-03T21:45:02.567027Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node [2026-06-03T21:45:02.569483Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node [2026-06-03T21:45:02.572115Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node [2026-06-03T21:45:02.572448Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node [2026-06-03T21:45:02.575236Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node [2026-06-03T21:45:02.578350Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node [2026-06-03T21:45:02.582103Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node [2026-06-03T21:45:02.645659Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:02.646779Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:02.650704Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node [2026-06-03T21:45:03.427412Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node [2026-06-03T21:45:03.464480Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.464598Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.465698Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.466206Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.469631Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node [2026-06-03T21:45:03.470585Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node [2026-06-03T21:45:03.530813Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.532019Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.534973Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node [2026-06-03T21:45:03.746900Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.747998Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.751093Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node [2026-06-03T21:45:03.912694Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.912855Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.914625Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.915162Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.918808Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node [2026-06-03T21:45:03.919893Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node [2026-06-03T21:45:03.979932Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:03.981423Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:03.984911Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node [2026-06-03T21:45:04.196331Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.198340Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.201886Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node [2026-06-03T21:45:04.263079Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.264241Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.267581Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node [2026-06-03T21:45:04.328732Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.330026Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.333882Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node [2026-06-03T21:45:04.445298Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.446642Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.450876Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node [2026-06-03T21:45:04.511957Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.513141Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.516343Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node [2026-06-03T21:45:04.578278Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.579533Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.583365Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node [2026-06-03T21:45:04.995722Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.995841Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:04.997000Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:04.997406Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.000944Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node [2026-06-03T21:45:05.002200Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node [2026-06-03T21:45:05.112460Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.112613Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.113787Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.114167Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.117643Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node [2026-06-03T21:45:05.118813Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node [2026-06-03T21:45:05.178764Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.180305Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.184126Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node [2026-06-03T21:45:05.197076Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.198495Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.201932Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node [2026-06-03T21:45:05.263119Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.264586Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.267911Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node [2026-06-03T21:45:05.379225Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.380507Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.383965Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node [2026-06-03T21:45:05.445228Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.447727Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.451334Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node [2026-06-03T21:45:05.512856Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.514018Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.517540Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node [2026-06-03T21:45:05.628965Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.630506Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.633507Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node [2026-06-03T21:45:05.662827Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.664414Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.667699Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node [2026-06-03T21:45:05.668495Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.670210Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.673531Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node [2026-06-03T21:45:05.734727Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.734962Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.736741Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.737467Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.741290Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node [2026-06-03T21:45:05.742602Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node [2026-06-03T21:45:05.802722Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.804578Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.808187Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node [2026-06-03T21:45:05.869447Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.870840Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.874397Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node [2026-06-03T21:45:05.935753Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:05.937330Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:05.940792Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node [2026-06-03T21:45:06.001932Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.003275Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.006799Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node [2026-06-03T21:45:06.218612Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.220402Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.223774Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node [2026-06-03T21:45:06.285198Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.286665Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.290613Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node [2026-06-03T21:45:06.351546Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.351704Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.353222Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.354164Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.357545Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node [2026-06-03T21:45:06.358045Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node [2026-06-03T21:45:06.419456Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.419604Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.420805Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.421280Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.425201Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node [2026-06-03T21:45:06.426414Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node [2026-06-03T21:45:06.454639Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.456224Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.459531Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node [2026-06-03T21:45:06.488629Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.490105Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.492748Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.493760Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node [2026-06-03T21:45:06.494469Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.497422Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node [2026-06-03T21:45:06.558907Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.560643Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.564217Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node [2026-06-03T21:45:06.625467Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.626843Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.630904Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node [2026-06-03T21:45:06.741906Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.743391Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.746786Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node [2026-06-03T21:45:06.807949Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.809330Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.812583Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node [2026-06-03T21:45:06.874058Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.875572Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.879408Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node [2026-06-03T21:45:06.908241Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.909595Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.913334Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node [2026-06-03T21:45:06.942568Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:06.944072Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:06.947459Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node [2026-06-03T21:45:07.109164Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.110614Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.113830Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node [2026-06-03T21:45:07.175411Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.176403Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.179622Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node [2026-06-03T21:45:07.241552Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.242586Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.245933Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node [2026-06-03T21:45:07.357228Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.358293Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.361471Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node [2026-06-03T21:45:07.390760Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.392277Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.395434Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node [2026-06-03T21:45:07.396254Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.397346Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.400164Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node [2026-06-03T21:45:07.461618Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.461707Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.462583Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.462909Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.466715Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node [2026-06-03T21:45:07.467983Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node [2026-06-03T21:45:07.528198Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.529217Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.532292Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node [2026-06-03T21:45:07.593572Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.593694Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.594527Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.594806Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.598582Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node [2026-06-03T21:45:07.599851Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node [2026-06-03T21:45:07.613931Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.614851Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.617896Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node [2026-06-03T21:45:07.631237Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.632102Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.635500Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node [2026-06-03T21:45:07.696912Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.697824Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.701045Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node [2026-06-03T21:45:07.730188Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.731067Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.734305Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node [2026-06-03T21:45:07.795454Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.796384Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.799765Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node [2026-06-03T21:45:07.861169Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.862014Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.865166Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node [2026-06-03T21:45:07.926460Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.927435Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.930966Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node [2026-06-03T21:45:07.992373Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:07.993254Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:07.996513Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node [2026-06-03T21:45:08.107920Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.108825Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.112556Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node [2026-06-03T21:45:08.173185Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.174026Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.176952Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node [2026-06-03T21:45:08.206213Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.207024Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.210214Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node [2026-06-03T21:45:08.271491Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.272303Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.275150Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node [2026-06-03T21:45:08.304497Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.305271Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.308815Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node [2026-06-03T21:45:08.420475Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.421231Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.424291Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node [2026-06-03T21:45:08.453758Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.454912Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.455221Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.457542Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.458194Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node [2026-06-03T21:45:08.460742Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node [2026-06-03T21:45:08.490005Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.490989Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.491445Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.491965Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.495377Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node [2026-06-03T21:45:08.495825Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node [2026-06-03T21:45:08.556295Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.556402Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.557103Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.557665Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.561205Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node [2026-06-03T21:45:08.562446Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node [2026-06-03T21:45:08.622840Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.623515Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.626856Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node [2026-06-03T21:45:08.988892Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:08.989581Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:08.993077Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node [2026-06-03T21:45:09.054181Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.268795Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.269558Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.272469Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node [2026-06-03T21:45:09.333862Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.498575Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.499338Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.502494Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node [2026-06-03T21:45:09.563548Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.728244Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.729020Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.732235Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node [2026-06-03T21:45:09.793629Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.793755Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.794489Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.797419Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node [2026-06-03T21:45:09.858681Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.858774Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.859456Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.862689Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node [2026-06-03T21:45:09.891875Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.956352Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:09.957428Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome' [2026-06-03T21:45:09.960238Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node [2026-06-03T21:45:09.989576Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.054193Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.054911Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.057894Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node [2026-06-03T21:45:10.087216Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.087697Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.087947Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.088320Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.088675Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.093415Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node [2026-06-03T21:45:10.094585Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node [2026-06-03T21:45:10.120399Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node [2026-06-03T21:45:10.121054Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.121140Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.121483Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.121864Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.125071Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node [2026-06-03T21:45:10.126118Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.126448Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node [2026-06-03T21:45:10.158413Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.166202Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:10.166524Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome' [2026-06-03T21:45:10.169453Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node [2026-06-03T21:45:10.198742Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-03T21:45:13.121547Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow [2026-06-03T21:45:21.395744Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Strelka somatic workflow successfully completed. [2026-06-03T21:45:21.395744Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [2026-06-03T21:45:21.395744Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] workflow version: 2.9.10 [2026-06-03T21:45:21.395827Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] [2026-06-03T21:45:21.395835Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Workflow successfully completed all tasks [2026-06-03T21:45:21.395842Z] [nf-e9e6522ac977542bb276e925fe7793ed-342a7-f8g8h] [642_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec