File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/c5a8b030ca4a59a8cd3686af045a57/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-03T21:45:02.427442Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T21:45:02.428013Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T21:45:02.428028Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T21:45:02.428034Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T21:45:02.428043Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXKiDFx8'
[2026-06-03T21:45:02.428048Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T21:45:02.428054Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T21:45:02.428059Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T21:45:02.428065Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-03T21:45:02.428070Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T21:45:02.428075Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T21:45:02.428082Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T21:45:02.428086Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T21:45:02.428093Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T21:45:02.428469Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T21:45:02.428567Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T21:45:02.435516Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T21:45:02.436156Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T21:45:02.436315Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T21:45:02.436531Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T21:45:02.436705Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.437485Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.437604Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.437779Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.438154Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.438232Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.438394Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.438938Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.439139Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.439552Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.439851Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.440091Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.441612Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.441982Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T21:45:02.442242Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.442477Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.442620Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.442699Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.442835Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.442912Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.443152Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.443242Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.443387Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.443477Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.443972Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444080Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444232Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444339Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444505Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444589Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444745Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444849Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.444985Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.445063Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.445291Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.445756Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.445894Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.445972Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446108Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446188Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446323Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446402Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446542Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446621Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.446851Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.447277Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.447419Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.447560Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.447699Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.447782Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.447915Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.447995Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.448129Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.448204Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.448423Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.448983Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449124Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449203Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449338Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449418Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449557Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449633Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449770Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449847Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.449981Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.450148Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.450908Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.450984Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.451121Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.451202Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.451336Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.451414Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.451548Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.451629Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.470177Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.470821Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.470968Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.471625Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.471893Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.472126Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.472401Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.472511Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.472913Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.473075Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.473711Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.473910Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.474416Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.474830Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.475372Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.475597Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T21:45:02.476365Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T21:45:02.476568Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.477143Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.481376Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T21:45:02.485006Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:02.485967Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:02.488618Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T21:45:02.490957Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T21:45:02.492157Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T21:45:02.496157Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T21:45:02.609826Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.609878Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.610620Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.610868Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:02.616780Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T21:45:02.633794Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T21:45:03.677326Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.677393Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.678182Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.678491Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.681619Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T21:45:03.682575Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T21:45:03.710645Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.711539Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.714037Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:03.775329Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.775396Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.776171Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.776352Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.779069Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T21:45:03.780039Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T21:45:03.808055Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.808799Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.811576Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T21:45:03.840600Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.841374Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.843792Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T21:45:03.873082Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.873142Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.873907Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.874145Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.877271Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T21:45:03.877882Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T21:45:03.938343Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.939048Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.941307Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T21:45:03.970649Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.971342Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:03.973456Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T21:45:04.002910Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.003575Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.005795Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:04.668037Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.668848Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.671266Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T21:45:04.700462Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.701162Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.703459Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:04.764837Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.764885Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.765583Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.765782Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.768220Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T21:45:04.769330Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:04.829717Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.829759Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.830431Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.830646Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.833639Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T21:45:04.858092Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:04.862531Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.862578Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.863243Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.863490Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.866301Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T21:45:04.867162Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T21:45:04.895437Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.895512Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.896243Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.896461Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.899178Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T21:45:04.900341Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T21:45:04.928325Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.929085Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.931411Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T21:45:04.992900Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.993601Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:04.996107Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:05.057359Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.057427Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.058107Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.058353Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.061277Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T21:45:05.062393Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T21:45:05.090155Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.091079Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.091320Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.092502Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.095590Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T21:45:05.096731Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T21:45:05.256410Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.257033Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.259674Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T21:45:05.288798Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.289460Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.291856Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T21:45:05.753739Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.754512Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.757342Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T21:45:05.918583Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.918646Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.919259Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.919532Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.922885Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T21:45:05.924085Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T21:45:05.927405Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.927995Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.930335Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T21:45:05.959679Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.959738Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.960333Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.960549Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:05.963767Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T21:45:05.964931Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T21:45:06.024744Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.025348Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.027980Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T21:45:06.589789Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.590424Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.593124Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T21:45:06.804555Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.805150Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.807801Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T21:45:06.808697Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.809300Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.811900Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T21:45:06.840921Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.841464Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.843749Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T21:45:06.848939Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.849434Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.851593Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T21:45:06.880871Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T21:45:06.881146Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.881377Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.881408Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.881929Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.882105Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.882305Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.882706Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.885226Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.885410Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T21:45:06.888610Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:06.889912Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:06.891227Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:06.918301Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.918817Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.921018Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:06.950396Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.950443Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.950912Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.951061Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.953453Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T21:45:06.953974Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T21:45:06.983020Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.983063Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.983517Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.983737Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T21:45:06.985992Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T21:45:06.987064Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T21:45:07.015445Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.015487Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.015923Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.016080Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.018421Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T21:45:07.019017Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:07.048278Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.048318Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.048777Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.049018Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.052125Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T21:45:07.052972Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T21:45:07.064892Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.065342Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.067856Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T21:45:07.080931Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.080982Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.081443Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.081621Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.084356Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T21:45:07.084781Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T21:45:07.113870Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.113912Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.113934Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.428059Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.428502Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.430627Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T21:45:07.460057Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.467607Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.467988Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T21:45:07.469990Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T21:45:07.499543Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.214124Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.214530Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.216638Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T21:45:08.246125Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.359926Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.360278Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.362224Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T21:45:08.391876Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.856187Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.856575Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.858511Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T21:45:08.888248Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.888620Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.888787Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.889012Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.889392Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.892526Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.893672Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T21:45:08.894769Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T21:45:08.922095Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.922138Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.922161Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.922350Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.922548Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.924846Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.925378Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T21:45:08.954545Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.954581Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.954735Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T21:45:08.956695Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T21:45:08.986285Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T21:45:13.055016Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T21:45:21.315622Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T21:45:21.315622Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] 
[2026-06-03T21:45:21.315622Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T21:45:21.315662Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] 
[2026-06-03T21:45:21.315673Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T21:45:21.315681Z] [nf-90c5a8b030ca4a59a8cd3686af045a57-13e18-5r98b] [770_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec