File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/7975ae91673545578b7bf0857a3349/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-04T16:54:09.776386Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:09.779335Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:09.779349Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:09.779354Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:09.779359Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXEQCj0C'
[2026-06-04T16:54:09.779363Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:09.779369Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:09.779372Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:09.779377Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:09.779381Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:09.779385Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:09.779388Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:09.779392Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:09.779397Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:09.779958Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:09.780118Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:09.786377Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:09.787168Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:09.787430Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:09.787737Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:09.788016Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788365Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788468Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788543Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788663Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788733Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788855Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788918Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789037Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789137Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789570Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789867Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.790014Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.790348Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.790910Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.794388Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:09.794785Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795117Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795664Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795961Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796228Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796307Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796437Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796509Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796635Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796700Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796828Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.796894Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.797234Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.797568Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.797687Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.797756Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.797896Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.797961Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798087Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798154Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798269Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798335Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798459Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798534Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798642Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.798726Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.799451Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.799758Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.800223Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.800290Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.800406Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.800528Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.800650Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.800727Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.801087Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.801543Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.801672Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.801736Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.801850Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.801915Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802027Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802097Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802208Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802272Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802384Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802446Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802559Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802690Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.803117Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.803692Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.803818Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.803883Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.818151Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.818284Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.818364Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.818565Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.818635Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.818738Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.820732Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.820935Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.821019Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.821088Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:09.890901Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.891715Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.892056Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.892530Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.893293Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.894167Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.895675Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.897483Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.898945Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.903954Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:09.906833Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:09.911798Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:09.922009Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:09.925711Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:10.924764Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.925698Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.929529Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:11.241587Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.242505Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.247673Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:11.357696Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.358639Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.363038Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:11.436354Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:11.474773Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.475732Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.479632Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:11.591117Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.591990Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.595855Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:11.656853Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.657830Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.662295Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:12.325076Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.325972Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.329659Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:12.390792Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.391636Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.396485Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:12.507310Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.508245Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.512800Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:12.573318Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.574204Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.578315Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:13.029448Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:13.040965Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.041083Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.041923Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.042414Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.047092Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:13.049639Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:13.108096Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.109012Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.113004Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:13.128558Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:13.142013Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.142870Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.146400Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:13.159800Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.160638Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.164264Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:13.193460Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.194752Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.198462Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:13.203092Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.203807Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.207527Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:13.236752Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.237574Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.241359Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:13.241797Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.242331Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.245507Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:13.306823Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.307646Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.311538Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:13.372540Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.372625Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.373379Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.373760Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.377955Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:13.379217Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:13.439017Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.439840Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.443561Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:13.655169Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.656093Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.659737Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:13.721132Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.721231Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.721916Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.722376Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.726404Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:13.727817Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:13.787402Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.788191Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.791998Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:14.355022Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.355791Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.360043Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:15.223396Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.224177Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.228856Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:15.289450Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.289580Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.290314Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.290885Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.295688Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:15.337309Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:15.355437Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.355529Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.356228Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.356576Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.360951Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:15.362184Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:15.421811Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.421896Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.422855Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.423529Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.430376Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:15.430981Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:15.538886Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.539618Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.543218Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:15.604624Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.605433Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.609271Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:15.622173Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.622849Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.627115Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:15.687440Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.688598Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.688973Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.689421Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.694381Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:15.904764Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.905694Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.909393Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:15.914133Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.915043Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.918745Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:15.979474Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.979572Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.980125Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.980815Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.985023Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:15.986091Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:16.045990Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.046110Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.046727Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.047136Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.051540Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:16.052707Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:16.112565Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.113205Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.116113Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.116787Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.117702Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:16.120682Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:16.532967Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.533632Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.538046Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:16.598854Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.599516Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.603642Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:16.664701Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.665319Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.669402Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:16.981079Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.981707Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.985700Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:17.046599Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.412257Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.412835Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.416336Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:17.477920Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.893443Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.893523Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.893924Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.894349Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.898055Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:17.898587Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:17.959041Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.959143Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.675777Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.676293Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.679679Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:18.740932Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.033082Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:19.055893Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.055981Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.056407Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.056952Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.060910Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:19.063744Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:19.123302Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.123386Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.187561Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.188033Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.191215Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:19.252255Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.252556Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.252710Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.253576Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.254462Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.258682Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.259193Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.261756Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:19.289821Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.289890Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.290102Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.290544Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.294979Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.295355Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.295892Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.359077Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.359155Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.359334Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.362524Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:19.391499Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.356913Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:28.668032Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:28.668032Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] 
[2026-06-04T16:54:28.668032Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:28.668121Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] 
[2026-06-04T16:54:28.668131Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:28.668158Z] [nf-7a7975ae91673545578b7bf0857a3349-205cb-xtbnf] [678_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec