File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/cb988a9184def84aa6317f591f3d51/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-hnk11mah because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:05:25,060 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:05:25,845 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:05:26,018 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:05:26,938 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:05:27,126 - cnv_pipe.batch.run_model - INFO - Processing cluster 2632 with 174 probes
2026-06-04 17:05:27,505 - cnv_pipe.batch.run_model.cluster2632 - INFO - Child process started for cluster 2632 with 174 probes
2026-06-04 17:06:16,954 - cnv_pipe.batch.run_model.cluster2632 - INFO - Child process finished cluster 2632. Wrote cluster_2632_samples.csv and cluster_2632_params.csv
2026-06-04 17:06:16,955 - cnv_pipe.batch.run_model - INFO - Cluster 2632 finished in 49.83 seconds. Status: SUCCESS