File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/d9267b6467b4157802aba4d8af5f6b/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-q0pox93f because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:20,897 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:21,859 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:22,056 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:59:23,160 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:59:23,369 - cnv_pipe.batch.run_model - INFO - Processing cluster 828 with 195 probes
2026-06-04 16:59:23,825 - cnv_pipe.batch.run_model.cluster828 - INFO - Child process started for cluster 828 with 195 probes
2026-06-04 17:00:32,201 - cnv_pipe.batch.run_model.cluster828 - INFO - Child process finished cluster 828. Wrote cluster_828_samples.csv and cluster_828_params.csv
2026-06-04 17:00:32,202 - cnv_pipe.batch.run_model - INFO - Cluster 828 finished in 68.83 seconds. Status: SUCCESS