Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/fca5f3616ff3dba5a32398ee041269/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/448667b5ccbe0b39d1a99e9a645079/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/448667b5ccbe0b39d1a99e9a645079/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/fca5f3616ff3dba5a32398ee041269/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T16:54:08.715962Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:08.719732Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:08.719761Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:08.719772Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:08.719777Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7PqZrN'
[2026-06-04T16:54:08.719782Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:08.719789Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:08.719793Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:08.719797Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-04T16:54:08.719801Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:08.719806Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:08.719810Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:08.719814Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:08.719818Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:08.720536Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:08.720591Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:08.726306Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:08.727176Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:08.727350Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:08.727502Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:08.727690Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.728319Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.728468Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.728564Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.728631Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.728961Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.729318Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.729442Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.729512Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.729638Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.729757Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.729870Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.729967Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.730146Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.731907Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.732172Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:08.732489Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.732741Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733028Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733093Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733286Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733353Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733464Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733529Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733636Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733696Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733808Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733874Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.733991Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.734243Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.734559Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.734633Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.734751Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.734811Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.734917Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.734979Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.735087Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.735153Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.735260Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.735326Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.735433Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.735492Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.735735Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.736072Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.736532Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.736593Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.736703Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.736826Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.736940Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.737004Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.737124Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.737269Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.737548Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.737929Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.738173Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.738578Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739083Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739147Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739254Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739317Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739424Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739483Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739592Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739658Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739768Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739862Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.739972Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.740036Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.756056Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.756173Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.756461Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.757166Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.757234Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.757319Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.758557Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.758929Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.759636Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.759766Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:08.759824Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.760577Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.760864Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.761520Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.762297Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.763710Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.766108Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.766521Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:08.767841Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.768935Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.771520Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:08.775063Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:08.778308Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:08.781762Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:08.785233Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:08.787895Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:08.789194Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:08.850567Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.850640Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.851577Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.852051Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.855934Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:08.856408Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.856876Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:08.857487Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.860471Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:08.889280Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.889337Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.890201Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.890409Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.893830Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:08.895050Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:08.954850Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.955819Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.958846Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:09.671653Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.672484Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.675365Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:09.736609Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.737457Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740450Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:09.801761Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.802483Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.805359Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:09.866797Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.867608Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.870314Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:10.032094Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.032901Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.036017Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:10.097135Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.097952Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.100787Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:10.130167Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.130983Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.133970Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:10.195276Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.196018Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.198852Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:10.510890Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.511668Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.514617Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:10.626473Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.627271Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.630151Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:10.643440Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.644150Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.646957Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:10.758409Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.759247Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.762252Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:10.873801Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.874830Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.878130Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:10.907067Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.907969Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.910467Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:10.911523Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.912226Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.914713Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:10.976297Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.977131Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.979995Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:11.041499Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.042336Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.045180Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:11.106756Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.107512Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.110529Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:11.171993Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.172823Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.176022Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:11.337482Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.338253Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.341160Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:11.402993Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.403755Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.406865Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:11.468190Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.468924Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.472052Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:11.733735Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.734418Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.736861Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:11.798405Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.799319Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.802258Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:12.213935Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.214924Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.217557Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:12.278975Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.280078Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.282989Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:12.344115Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.344218Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.345292Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.345843Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.348972Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:12.349208Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:12.410191Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.410331Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.411133Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.411695Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.414553Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:12.415214Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:12.475965Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.476086Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.476819Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.477231Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.480477Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:12.481573Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:12.591652Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.592463Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.595002Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:12.624277Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.624900Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.627885Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:12.689117Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.689960Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.692882Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:13.054681Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.055616Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.058262Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:13.169671Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.170672Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.173391Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:13.202798Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.203671Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.204050Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.206090Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.206569Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:13.209196Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:13.238434Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.239168Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.241963Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:13.353387Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.354019Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.357150Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:13.468217Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.468784Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.471444Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:13.500944Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.501497Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.503963Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:13.533398Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.533983Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.536844Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:13.598190Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.598758Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.601310Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:13.662656Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.663184Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.665815Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:13.695224Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.010103Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.010613Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.013231Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:14.043859Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.258390Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.258912Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.261509Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:14.291012Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.605762Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.606272Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.609152Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:14.670488Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.670570Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.671034Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.673235Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:14.702933Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.917278Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.917363Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.917761Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.919320Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.919932Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:14.922620Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:14.951809Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.959582Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.223933Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.224516Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.226946Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:15.256626Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.256884Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.257017Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.257249Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.257661Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.261386Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:15.262304Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:15.263085Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:15.290487Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.290553Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.290575Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.290771Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.292096Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.292739Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:15.294990Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:15.324728Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.324789Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.324963Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.326973Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:15.356844Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.328365Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:27.608458Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:27.608458Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] 
[2026-06-04T16:54:27.608458Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:27.608521Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] 
[2026-06-04T16:54:27.608529Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:27.608536Z] [nf-70fca5f3616ff3dba5a32398ee041269-6c13b-5rg45] [587_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec