Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/7d9148e4623adc99f4181585ac5bfa/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/5e14d3c54516fce231a15f3d7307d2/HCC1395_BL.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/7d9148e4623adc99f4181585ac5bfa/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/5e14d3c54516fce231a15f3d7307d2/HCC1395_BL.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:157000001, elapsed 0.0s, est remaining 0.4s, peak mem 102MB, user 0.1s, sys 0.3s, output queue size 11
progress 10% @chr2:67000001, elapsed 0.0s, est remaining 0.4s, peak mem 103MB, user 0.2s, sys 0.7s, output queue size 9
progress 15% @chr2:228000001, elapsed 0.1s, est remaining 0.3s, peak mem 103MB, user 0.3s, sys 1.2s, output queue size 11
progress 20% @chr3:145000001, elapsed 0.1s, est remaining 0.3s, peak mem 103MB, user 0.4s, sys 1.7s, output queue size 9
progress 25% @chr4:104000001, elapsed 0.1s, est remaining 0.3s, peak mem 103MB, user 0.5s, sys 2.2s, output queue size 11
progress 30% @chr5:76000001, elapsed 0.1s, est remaining 0.3s, peak mem 103MB, user 0.6s, sys 2.7s, output queue size 10
progress 35% @chr6:50000001, elapsed 0.1s, est remaining 0.3s, peak mem 103MB, user 0.8s, sys 3.1s, output queue size 15
progress 40% @chr7:46000001, elapsed 0.2s, est remaining 0.2s, peak mem 103MB, user 0.8s, sys 3.6s, output queue size 14
progress 45% @chr8:62000001, elapsed 0.2s, est remaining 0.2s, peak mem 103MB, user 0.9s, sys 4.1s, output queue size 7
progress 50% @chr9:78000001, elapsed 0.2s, est remaining 0.2s, peak mem 103MB, user 1.0s, sys 4.5s, output queue size 7
progress 55% @chr10:99000001, elapsed 0.2s, est remaining 0.2s, peak mem 103MB, user 1.1s, sys 4.9s, output queue size 11
progress 60% @chr11:124000001, elapsed 0.2s, est remaining 0.2s, peak mem 103MB, user 1.2s, sys 5.4s, output queue size 7
progress 65% @chr13:23000001, elapsed 0.3s, est remaining 0.1s, peak mem 103MB, user 1.3s, sys 5.8s, output queue size 8
progress 70% @chr14:67000001, elapsed 0.3s, est remaining 0.1s, peak mem 103MB, user 1.5s, sys 6.3s, output queue size 4
progress 75% @chr16:16000001, elapsed 0.3s, est remaining 0.1s, peak mem 103MB, user 1.6s, sys 6.8s, output queue size 7
progress 80% @chr18:5000001, elapsed 0.3s, est remaining 0.1s, peak mem 103MB, user 1.7s, sys 7.2s, output queue size 11
progress 85% @chr20:26000001, elapsed 0.3s, est remaining 0.1s, peak mem 103MB, user 1.8s, sys 7.7s, output queue size 6
progress 90% @chrX:40000001, elapsed 0.4s, est remaining 0.0s, peak mem 151MB, user 2.2s, sys 7.9s, output queue size 114
progress 95% @chrY:37000001, elapsed 0.4s, est remaining 0.0s, peak mem 164MB, user 2.6s, sys 8.2s, output queue size 276
progress 100% @chr21:41000001, elapsed 0.9s, est remaining 0.0s, peak mem 187MB, user 4.2s, sys 8.7s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 64
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 51395354
reads: 1001089
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.804 user 4.283 sys 6.555 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.001 sys 0.888 real
idle: 73 calls 0.020 user 0.022 sys 44.581 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 196866048 mem 4.610 user 9.300 sys 2.066 real